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Report for CCDS22504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22504.1 Public Mus musculus 8 Siah1a 23 108 98 CCDS HistoryNCBI Gene:20437Re-query CCDS DB by CCDS ID:22504.1Re-query CCDS DB by GeneID:20437See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045296.5 ENSMUSP00000044123.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045296.5Link to Ensembl Protein Viewer:ENSMUSP00000044123.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000045296Re-query CCDS DB by Protein ID:ENSMUSP00000044123
Original member Current member NCBI NM_009172.2 NP_033198.1 Accepted alive Link to Nucleotide Sequence:NM_009172.2Link to Protein Sequence:NP_033198.1Re-query CCDS DB by Nucleotide ID:NM_009172Re-query CCDS DB by Protein ID:NP_033198Link to BLAST:NP_033198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033198.1 282 P61092 282 100% 0 0

Chromosomal Locations for CCDS 22504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 86725006 86725854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (849 nt):
ATGAGCCGCCAGACTGCTACAGCATTACCCACTGGCACCTCAAAGTGTCCACCATCCCAGAGGGTACCTG
CCTTGACCGGCACAACTGCATCCAACAATGACTTGGCGAGTCTTTTTGAGTGTCCTGTCTGCTTTGACTA
TGTGTTGCCACCTATTCTTCAGTGTCAGAGTGGCCATCTTGTTTGTAGCAACTGTCGCCCCAAACTTACA
TGTTGTCCCACTTGCCGGGGCCCATTGGGATCCATTCGCAACTTGGCTATGGAGAAAGTGGCCAACTCAG
TACTCTTCCCTTGTAAATATGCCTCTTCTGGATGTGAAATAACTCTGCCACACACCGAAAAGGCAGAGCA
CGAGGAGCTCTGTGAGTTCAGGCCTTACTCCTGCCCCTGCCCTGGTGCTTCCTGTAAGTGGCAAGGCTCC
TTGGATGCCGTCATGCCCCACCTGATGCATCAGCACAAGTCCATTACCACCCTGCAAGGAGAAGATATAG
TTTTCCTTGCTACAGACATTAACCTTCCTGGTGCTGTTGACTGGGTGATGATGCAGTCTTGTTTTGGCTT
TCATTTCATGTTAGTCTTGGAGAAACAAGAAAAATATGATGGTCATCAGCAGTTCTTTGCAATTGTACAA
CTGATAGGAACACGCAAGCAAGCTGAAAATTTTGCATATCGACTTGAGCTAAATGGTCATAGGCGGCGAT
TGACTTGGGAAGCGACTCCTCGGTCTATTCATGAGGGAATTGCAACAGCCATTATGAATAGTGACTGCCT
AGTGTTTGACACCAGCATTGCACAGCTTTTTGCAGAAAATGGCAATTTAGGCATCAATGTAACTATTTCC
ATGTGTTGA

Translation (282 aa):
MSRQTATALPTGTSKCPPSQRVPALTGTTASNNDLASLFECPVCFDYVLPPILQCQSGHLVCSNCRPKLT
CCPTCRGPLGSIRNLAMEKVANSVLFPCKYASSGCEITLPHTEKAEHEELCEFRPYSCPCPGASCKWQGS
LDAVMPHLMHQHKSITTLQGEDIVFLATDINLPGAVDWVMMQSCFGFHFMLVLEKQEKYDGHQQFFAIVQ
LIGTRKQAENFAYRLELNGHRRRLTWEATPRSIHEGIATAIMNSDCLVFDTSIAQLFAENGNLGINVTIS
MC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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