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Report for CCDS22403.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22403.1 Public Mus musculus 8 Jak3 23 108 98 CCDS HistoryNCBI Gene:16453Re-query CCDS DB by CCDS ID:22403.1Re-query CCDS DB by GeneID:16453See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22403.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000051995.13 ENSMUSP00000060073.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000051995.13Link to Ensembl Protein Viewer:ENSMUSP00000060073.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000051995Re-query CCDS DB by Protein ID:ENSMUSP00000060073
Original member Current member EBI ENSMUST00000110012.1 ENSMUSP00000105639.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110012.1Link to Ensembl Protein Viewer:ENSMUSP00000105639.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110012Re-query CCDS DB by Protein ID:ENSMUSP00000105639
Original member Current member EBI ENSMUST00000110013.9 ENSMUSP00000105640.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110013.9Link to Ensembl Protein Viewer:ENSMUSP00000105640.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000110013Re-query CCDS DB by Protein ID:ENSMUSP00000105640
Original member Current member NCBI NM_001190830.1 NP_001177759.1 Accepted alive Link to Nucleotide Sequence:NM_001190830.1Link to Protein Sequence:NP_001177759.1Re-query CCDS DB by Nucleotide ID:NM_001190830Re-query CCDS DB by Protein ID:NP_001177759Link to BLAST:NP_001177759.1
Original member Current member NCBI NM_010589.6 NP_034719.2 Accepted alive Link to Nucleotide Sequence:NM_010589.6Link to Protein Sequence:NP_034719.2Re-query CCDS DB by Nucleotide ID:NM_010589Re-query CCDS DB by Protein ID:NP_034719Link to BLAST:NP_034719.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177759.1 1100 Q62137-1 1100 99.8182% 0 2
NP_034719.2 1100 Q62137-1 1100 99.8182% 0 2

Chromosomal Locations for CCDS 22403.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 71678338 71678521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71678677 71678800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71678978 71679089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71679202 71679347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71679559 71679844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71680435 71680557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71680640 71680797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71680883 71680994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71681501 71681687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71682063 71682187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71682282 71682413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71682900 71682984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71683332 71683459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71683953 71684085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71684217 71684368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71684484 71684634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71685166 71685305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71685385 71685574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71685749 71685873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71685953 71686125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71686855 71686972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71687239 71687349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 71688040 71688147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3303 nt):
ATGGCACCTCCAAGTGAGGAGACACCTCTGATCCCTCAGCGCTCTTGCAGCCTCTCATCCTCAGAGGCAG
GAGCCCTGCATGTGCTCCTTCCTCCCCGGGGACCTGGGCCTCCCCAGCGATTGTCATTCTCTTTTGGGGA
CTACTTGGCTGAGGATTTATGTGTGCGAGCTGCCAAGGCCTGTGGCATCCTGCCTGTTTATCATTCGCTT
TTCGCTCTGGCCACTGAGGACTTCTCTTGCTGGTTTCCCCCAAGCCACATCTTCTGCATAGAGGACGTGG
ACACTCAAGTCTTGGTCTACAGGCTACGCTTTTATTTCCCTGACTGGTTTGGGCTGGAGACATGTCACCG
CTTTGGGCTGCGCAAAGATTTGACCAGTGCCATCCTTGACTTACACGTTTTAGAACATCTCTTTGCTCAG
CACCGCAGTGACCTGGTGAGTGGGCGCCTCCCGGTGGGCCTTAGCATGAAGGAGCAGGGAGAGTTCCTGA
GCCTGGCCGTGCTGGACTTGGCCCAGATGGCTCGTGAGCAGGCCCAGCGCCCAGGAGAGCTGCTGAAGAC
GGTCAGTTACAAAGCCTGTCTGCCGCCCAGCCTGCGCGATGTGATCCAGGGCCAGAACTTCGTGACACGC
AGGCGCATCCGCAGGACCGTGGTCTTGGCGCTGCGCCGTGTGGTCGCCTGCCAGGCCGACCGCTACGCGC
TCATGGCCAAGTATATTTTGGACCTGGAGCGGCTACATCCAGCGGCCACCACCGAGACCTTCCGTGTGGG
GCTCCCGGGCGCCCAGGAGGAGCCGGGGCTTCTGCGTGTGGCGGGGGACAACGGCATCTCCTGGAGCTCC
GGGGACCAGGAGCTTTTCCAGACCTTCTGTGACTTTCCGGAAATCGTGGATGTCAGCATCAAGCAGGCCC
CACGTGTGGGTCCGGCAGGGGAACACCGGCTGGTCACCGTCACCAGGATGGACGGCCACATCCTGGAAGC
GGAGTTTCCGGGGCTGCCTGAGGCGCTGTCCTTCGTGGCCCTTGTGGATGGGTACTTCCGCCTGATCTGC
GACTCCAGGCATTATTTCTGCAAGGAGGTGGCGCCGCCGCGGCTGCTGGAGGAGGAGGCGGAGCTGTGCC
ATGGACCCATCACGTTAGACTTTGCCATCCACAAGCTGAAGGCCGCTGGCTCCCTCCCAGGCACCTACAT
TCTCCGCCGCAGCCCGCAGGACTATGACAGCTTTCTTCTTACCGCCTGCGTCCAGACTCCTCTTGGCCCC
GACTACAAGGGCTGCCTCATCCGCCAGGACCCCAGCGGGGCTTTCTCCCTGGTTGGCCTCAGCCAGCCCC
ACAGAAGCCTGCGGGAGCTGCTTGCAGCCTGCTGGAATTCTGGGCTGCGAGTAGACGGTGCTGCCCTGAA
CCTAACATCCTGCTGCGCTCCCAGACCCAAGGAAAAGTCCAATTTGATCGTGGTGCGAAGGGGCTGCACC
CCCGCGCCTGCCCCTGGCTGCTCCCCGTCCTGCTGTGCGCTGACACAGCTGAGCTTCCACACAATTCCAA
CGGACAGCCTGGAGTGGCACGAGAACCTGGGTCACGGTTCTTTTACCAAGATCTTCCGTGGCCGCAGGCG
GGAGGTCGTGGATGGTGAGACACATGACTCGGAAGTCCTCCTGAAGGTCATGGACTCCAGACATCGGAAC
TGCATGGAGTCTTTTCTGGAAGCCGCAAGCTTGATGAGCCAAGTATCCTACCCGCACCTGGTGTTACTGC
ACGGCGTCTGCATGGCTGGAGACAGCATCATGGTGCAGGAATTTGTGTATCTAGGAGCAATTGACATGTA
CCTGCGCAAGCGTGGCCACCTGGTGTCAGCCAGCTGGAAACTGCAGGTGACCAAGCAGCTGGCATATGCC
CTTAACTACTTGGAGGACAAAGGCCTTCCTCACGGCAACGTCTCAGCACGGAAGGTGCTCCTGGCTCGTG
AGGGGGGTGATGGGAATCCACCTTTCATTAAGCTGAGTGATCCTGGTGTCAGTCCCACTGTGCTGAGCCT
GGAAATGCTCACCGACAGAATACCCTGGGTGGCCCCCGAATGTCTCCAGGAGGCTCAGACACTCGGCTTG
GAGGCTGACAAGTGGGGCTTTGGAGCCACCACGTGGGAGGTGTTCAGCGGGGGACCCGCCCACATCACCT
CGCTGGAGCCCGCCAAAAAGCTGAAGTTCTATGAGGACCAGGGACAGCTGCCCGCTCTCAAATGGACAGA
ACTGGCGGGACTTATCACACAGTGCATGGCCTATGATCCTGGCCGGCGCCCCTCCTTCCGAGCTATCCTC
AGAGACCTCAACGGCCTCATTACATCAGATTACGAGCTCCTCTCAGACCCCACACCTGGCATCCCGAGTC
CTCGAGATGAGCTGTGCGGTGGCGCCCAGCTCTATGCCTGCCAGGACCCCGCCATATTCGAGGAGAGACA
CCTTAAGTACATCTCTTTGCTGGGCAAGGGCAACTTTGGCAGCGTGGAGCTGTGCCGCTATGACCCCCTG
GGGGACAATACGGGACCCCTGGTGGCAGTGAAACAGCTACAGCACAGCGGGCCAGACCAGCAGAGGGACT
TCCAGCGGGAGATTCAGATCCTTAAGGCTCTGCACAGCGACTTCATCGTCAAGTACCGGGGAGTCAGCTA
TGGGCCAGGTCGCCAGAGCCTGCGGTTGGTGATGGAGTACCTGCCCAGCGGCTGCCTGCGAGACTTCCTG
CAGCGCCATCGCGCGCGCCTGCACACCGACCGCCTACTGCTGTTCGCTTGGCAGATCTGCAAGGGCATGG
AGTACCTGGGTGCGCGCCGCTGCGTACACCGTGACCTGGCTGCGCGCAACATCTTGGTGGAGAGCGAGGC
TCATGTGAAGATCGCGGACTTCGGCCTCGCTAAGCTGCTGCCCCTGGGAAAGGACTACTACGTGGTCCGC
GAGCCTGGCCAAAGCCCCATCTTTTGGTATGCCCCGGAGTCCCTATCTGACAACATCTTCTCCCGCCAAT
CTGACGTGTGGAGCTTCGGAGTGGTGTTGTACGAGCTCTTCACCTACTGCGACAAGAGCTGCAGCCCATC
CGCTGAGTTCCTGAGCATGATGGGGCCTGAGCGTGAAGGACCCCCGCTCTGCCGCCTCCTGGAGCTGCTG
GCAGAGGGCCGACGCCTCCCACCACCTCCCACCTGCCCCACCGAGGTTCAGGAGCTCATGCAGCTGTGCT
GGGCGCCCAGCCCGCACGACCGGCCAGCCTTCGGCACCCTGAGCCCCCAGCTGGACGCGCTGTGGCGTGG
AAGACCCGGATAG

Translation (1100 aa):
MAPPSEETPLIPQRSCSLSSSEAGALHVLLPPRGPGPPQRLSFSFGDYLAEDLCVRAAKACGILPVYHSL
FALATEDFSCWFPPSHIFCIEDVDTQVLVYRLRFYFPDWFGLETCHRFGLRKDLTSAILDLHVLEHLFAQ
HRSDLVSGRLPVGLSMKEQGEFLSLAVLDLAQMAREQAQRPGELLKTVSYKACLPPSLRDVIQGQNFVTR
RRIRRTVVLALRRVVACQADRYALMAKYILDLERLHPAATTETFRVGLPGAQEEPGLLRVAGDNGISWSS
GDQELFQTFCDFPEIVDVSIKQAPRVGPAGEHRLVTVTRMDGHILEAEFPGLPEALSFVALVDGYFRLIC
DSRHYFCKEVAPPRLLEEEAELCHGPITLDFAIHKLKAAGSLPGTYILRRSPQDYDSFLLTACVQTPLGP
DYKGCLIRQDPSGAFSLVGLSQPHRSLRELLAACWNSGLRVDGAALNLTSCCAPRPKEKSNLIVVRRGCT
PAPAPGCSPSCCALTQLSFHTIPTDSLEWHENLGHGSFTKIFRGRRREVVDGETHDSEVLLKVMDSRHRN
CMESFLEAASLMSQVSYPHLVLLHGVCMAGDSIMVQEFVYLGAIDMYLRKRGHLVSASWKLQVTKQLAYA
LNYLEDKGLPHGNVSARKVLLAREGGDGNPPFIKLSDPGVSPTVLSLEMLTDRIPWVAPECLQEAQTLGL
EADKWGFGATTWEVFSGGPAHITSLEPAKKLKFYEDQGQLPALKWTELAGLITQCMAYDPGRRPSFRAIL
RDLNGLITSDYELLSDPTPGIPSPRDELCGGAQLYACQDPAIFEERHLKYISLLGKGNFGSVELCRYDPL
GDNTGPLVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFL
QRHRARLHTDRLLLFAWQICKGMEYLGARRCVHRDLAARNILVESEAHVKIADFGLAKLLPLGKDYYVVR
EPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLSMMGPEREGPPLCRLLELL
AEGRRLPPPPTCPTEVQELMQLCWAPSPHDRPAFGTLSPQLDALWRGRPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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