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Report for CCDS22349.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22349.1 Public Mus musculus 8 Atp13a1 23 108 98 CCDS HistoryNCBI Gene:170759Re-query CCDS DB by CCDS ID:22349.1Re-query CCDS DB by GeneID:170759See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22349.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034326.6 ENSMUSP00000034326.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034326.6Link to Ensembl Protein Viewer:ENSMUSP00000034326.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034326Re-query CCDS DB by Protein ID:ENSMUSP00000034326
Original member Current member NCBI NM_133224.2 NP_573487.2 Accepted alive Link to Nucleotide Sequence:NM_133224.2Link to Protein Sequence:NP_573487.2Re-query CCDS DB by Nucleotide ID:NM_133224Re-query CCDS DB by Protein ID:NP_573487Link to BLAST:NP_573487.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_573487.2 1200 Q9EPE9 1200 100% 0 0

Chromosomal Locations for CCDS 22349.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 69791255 69791641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69793749 69793838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69793930 69794120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69796579 69796651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69796830 69796985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69797082 69797151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69797225 69797331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69797707 69797836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69797941 69797996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69798387 69798513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69798584 69798721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69798812 69798932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69799321 69799478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69799762 69799937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69800012 69800122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69800902 69801027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69802034 69802142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69803460 69803659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69803740 69803836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69805220 69805377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69805448 69805562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69805646 69805842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69806761 69806903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69806997 69807108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69807192 69807335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 69807419 69807529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3603 nt):
ATGGCGGTGGTGGGCAACGCGGTTCCTTGCGGAGCCCGGCCTGGCGGGGCCCGGGACAACGGGTCTCCTC
AGCCTGGGTCGCGATTGCGGCCGGGCCTAGCTGCCGGGCCAGCACTCATAGCGAACGGCGACGAACTGGT
GGCCGCCGTGTGGCCGTACCGGCGGCTGGCGCTTCTGCGGCGCCTCACCGTGCTGCCGTTTGCCGGGCTG
CTGTACCCAGCCTGGCTGGGCGCCGCCGCCAGCGGTTGCTGGGGATGGGGCAGCAGCTGGACCCAGATAC
CCGAGGCCGCGCTGCTGGCGCTCGCCACCATCTGCCTCGCGCACGCACTCACTGTCCTGTCGGGGCATTG
GTCTGTGCACGCGCACTGCGCGCTCACCTGCACCCCGGAGTATGATCCCAACAAAGTAACCTTTGTGAAG
GTGGTGCCAACCCCCAACAATGGCTCCACTGAGCTTGTGGCCCTGCACCGTGACAAGGGTGAAGATGGGC
TGGAGGTGCTGTCATTTGAATTCCAGAAGATCAAATATTCCTATGATGCCCTGGAGAAAAAGCAGTTCCT
TCCGGTGGCCTTCCCAGTGGGGAATGCCTTCTCTTACTATCAAAGCAACAGAGGCTTCCAGGAAGACTCA
GAGATCCGAGCTGCAGAGAAGAAGTTTGGAAGCAACAAGGCTGAGATGGTAGTGCCCGACTTCTCTGAGC
TTTTCAAGGAGAGAGCCACAGCCCCTTTCTTCGTGTTTCAGGTATTCTGCGTTGGGCTCTGGTGCCTGGA
CGAGTATTGGTACTACAGTGTCTTCACTCTGTCCATGCTGGTGGCTTTCGAAGCTTCCCTAGTGCAGCAG
CAGATGAGGAACATGTCAGAGATCCGAAAGATGGGCAACAAGCCCCATATGATACAGGTCTACCGCAGCC
GAAAGTGGAGGCCTGTCGCCAGTGATGACATTGTTCCTGGGGACATCGTGTCTATCGGCCGCTCACCCCA
GGAGAACTTGGTGCCCTGTGATGTACTGCTGCTACGGGGCCGCTGCATTGTAGACGAGGCCATGCTCACT
GGGGAATCTGTGCCACAAATGAAGGAGCCCATTGAAGACCTGAGCCCAGACCGTGTCCTAGACCTGCAGG
CCGATGCTCGGCTGCATGTCATCTTTGGGGGCACCAAGGTGGTACAGCACATTCCCCCGCAGAAGGCCAC
CTCGGGCCTGAAGCCGGTCGACAATGGATGTGTGGCCTTTGTCCTGAGAACTGGGTTCAACACATCCCAG
GGCAGACTACTGCGTACAATTCTCTTTGGGGTAAAGAGGGTCACTGCAAACAACTTGGAGACCTTTATCT
TCATCCTCTTCCTCCTGGTCTTCGCCATTGCTGCAGCTGCGTATGTGTGGGTTGAAGGGACCAAGGACCC
CAGCCGGAACCGTTACAAGCTCTTTCTGGAGTGCACCCTCATCCTCACCTCTGTTGTACCCCCTGAACTG
CCCATTGAACTGTCTCTGGCTGTCAACACCTCCCTCATCGCCTTGGCCAAGCTCTACATGTACTGCACAG
AGCCTTTCCGGATCCCCTTCGCTGGCAAGGTTGAAGTGTGTTGCTTTGACAAGACGGGTACCTTGACCAG
TGACAGCCTGGTGGTGCGAGGCGTGGCAGGGCTGAGAGATGGGAAAGAGGTGACCCCAGTGTCCAGCATT
CCCATAGAAACACACCGGGCCCTGGCCTCCTGCCACTCGCTCATGCAGCTGGATGACGGCACCCTAGTGG
GTGACCCTCTGGAAAAGGCCATGCTGACAGCTGTGGACTGGACACTGACCAAAGATGAGAAAGTATTCCC
CCGAAGTATTAAAACTCAGGGGCTGAAAATTCACCAGCGCTTTCATTTTGCCAGTGCCCTAAAGCGAATG
TCTGTGCTCGCCTCCTACGAGAAGCTTGGCTCCACTGACCTCTGCTACATCGCGGCTGTGAAGGGGGCCC
CCGAAACCCTGCACTCTATGTTTTCTCAGTGCCCACCTGACTACCACCACATCCACACTGAGATCTCTCG
GGAAGGAGCCCGTGTCCTGGCTCTGGGATACAAGGAGCTAGGACATCTCACACATCAGCAGGCCCGGGAG
ATCAAGCGGGAGGCACTGGAGTGCAGCCTCAAGTTTGTGGGCTTCATCGTGGTCTCCTGTCCCCTCAAAG
CTGACTCCAAGGCTGTGATCCGAGAGATCCAGAATGCATCCCACAGGGTGGTCATGATCACAGGAGACAA
CCCCCTCACTGCATGCCATGTAGCTCAGGAGCTGCACTTCATTGACAAAGCCCACACGCTCATCTTGCAT
CCTCCCTCGGAGAAAGGCCAGCCATGTGAGTGGCGCTCCATTGATAGCAGCATCGTTCTGCCTCTCACCC
TGGGCTCCCCCAAGGCACTGGCCCTGGAGCACGCGCTATGCCTCACAGGCGATGGCTTGGCTCACCTGCA
GGCTGTGGACCCCCAGCAGCTGCTCTGCCTCATCCCTCATGTGCAGGTGTTTGCCCGTGTAGCCCCTAAG
CAGAAGGAATTTGTCATCACTAGCCTGAAGGAGCTGGGTTATGTGACCCTTATGTGTGGAGATGGCACCA
ACGATGTGGGCGCACTGAAGCACGCTGATGTGGGTGTAGCACTCCTGGCCAATGCCCCTGAGAGGGTTGT
AGAACGGCGGCGACGGCCAAGGGACAGCCCTGTCCTGAGCAACAGTGGCCCCAGAGTCTCCAGGTCCACC
AAACAGAAGTCGGCACTCCTCTCTCCTGAGGAGCCACCAGCTTCCCACAGGGACCGCCTGAGCCAGGTGC
TGCGGGACCTGGAGGAGGAGAGCACCCCCATCGTGAAGCTGGGGGATGCCAGCATCGCAGCACCCTTCAC
CTCCAAGCTGTCCTCCATCCAGTGCATCTGCCACGTGATCAAGCAGGGCCGGTGCACATTGGTGACGACG
CTGCAGATGTTCAAGATCCTGGCCCTCAATGCCCTCATCCTGGCATACAGCCAAAGTGTCCTCTACCTGG
AGGGTGTCAAGTTCAGTGACTTCCAGGCCACACTGCAGGGGCTGCTGCTGGCCGGCTGCTTCCTCTTCAT
CTCCCGCTCCAAGCCTCTCAAGACTCTTTCCCGAGAGCGGCCCCTACCCAACATCTTCAACCTGTACACC
ATCCTTACGGTGATGCTGCAATTCTCTGTCCACTTCCTGAGCCTGGTCTACCTGTACCGTGAGGCCCAGG
CACGCAGCCCTGAGAAGCAGGAGCAGTTTGTAGACCTGTACAAGGAGTTTGAGCCGAGCCTGGTCAACAG
CACTGTGTACATCATGGCCATGGCCATGCAGATGGCCACCTTCGCCATCAACTACAAGGGCCCACCCTTC
ATGGAGAGCCTGCCTGAGAACAAGCCCCTGGTGTGGAGTCTGGCAGTGTCACTGCTGGCCATCATTGGCT
TGCTCCTTGGTTCCTCACCTGACTTCAACAGCCAGTTTGGCCTTGTGGACATCCCTGTAGAGTTCAAGCT
GGTCATCGGCCAGGTCCTGGCCCTGGACTTCTGCCTGGCACTCCTGGCTGACCGTGTCCTACAGTTCTTT
TTGGGGACTCCGAAGCTGAGAGTGCCTTCCTGA

Translation (1200 aa):
MAVVGNAVPCGARPGGARDNGSPQPGSRLRPGLAAGPALIANGDELVAAVWPYRRLALLRRLTVLPFAGL
LYPAWLGAAASGCWGWGSSWTQIPEAALLALATICLAHALTVLSGHWSVHAHCALTCTPEYDPNKVTFVK
VVPTPNNGSTELVALHRDKGEDGLEVLSFEFQKIKYSYDALEKKQFLPVAFPVGNAFSYYQSNRGFQEDS
EIRAAEKKFGSNKAEMVVPDFSELFKERATAPFFVFQVFCVGLWCLDEYWYYSVFTLSMLVAFEASLVQQ
QMRNMSEIRKMGNKPHMIQVYRSRKWRPVASDDIVPGDIVSIGRSPQENLVPCDVLLLRGRCIVDEAMLT
GESVPQMKEPIEDLSPDRVLDLQADARLHVIFGGTKVVQHIPPQKATSGLKPVDNGCVAFVLRTGFNTSQ
GRLLRTILFGVKRVTANNLETFIFILFLLVFAIAAAAYVWVEGTKDPSRNRYKLFLECTLILTSVVPPEL
PIELSLAVNTSLIALAKLYMYCTEPFRIPFAGKVEVCCFDKTGTLTSDSLVVRGVAGLRDGKEVTPVSSI
PIETHRALASCHSLMQLDDGTLVGDPLEKAMLTAVDWTLTKDEKVFPRSIKTQGLKIHQRFHFASALKRM
SVLASYEKLGSTDLCYIAAVKGAPETLHSMFSQCPPDYHHIHTEISREGARVLALGYKELGHLTHQQARE
IKREALECSLKFVGFIVVSCPLKADSKAVIREIQNASHRVVMITGDNPLTACHVAQELHFIDKAHTLILH
PPSEKGQPCEWRSIDSSIVLPLTLGSPKALALEHALCLTGDGLAHLQAVDPQQLLCLIPHVQVFARVAPK
QKEFVITSLKELGYVTLMCGDGTNDVGALKHADVGVALLANAPERVVERRRRPRDSPVLSNSGPRVSRST
KQKSALLSPEEPPASHRDRLSQVLRDLEEESTPIVKLGDASIAAPFTSKLSSIQCICHVIKQGRCTLVTT
LQMFKILALNALILAYSQSVLYLEGVKFSDFQATLQGLLLAGCFLFISRSKPLKTLSRERPLPNIFNLYT
ILTVMLQFSVHFLSLVYLYREAQARSPEKQEQFVDLYKEFEPSLVNSTVYIMAMAMQMATFAINYKGPPF
MESLPENKPLVWSLAVSLLAIIGLLLGSSPDFNSQFGLVDIPVEFKLVIGQVLALDFCLALLADRVLQFF
LGTPKLRVPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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