NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22316.1 Public Mus musculus 8 Sap30 23 108 98 CCDS HistoryNCBI Gene:60406Re-query CCDS DB by CCDS ID:22316.1Re-query CCDS DB by GeneID:60406See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034022.3 ENSMUSP00000034022.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034022.3Link to Ensembl Protein Viewer:ENSMUSP00000034022.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000034022Re-query CCDS DB by Protein ID:ENSMUSP00000034022
Original member NCBI NM_021788.2 NP_068560.1 Updated not alive Link to Nucleotide Sequence:NM_021788.2Link to Protein Sequence:NP_068560.1Re-query CCDS DB by Nucleotide ID:NM_021788Re-query CCDS DB by Protein ID:NP_068560
Current member NCBI NM_021788.3 NP_068560.1 Accepted alive Link to Nucleotide Sequence:NM_021788.3Link to Protein Sequence:NP_068560.1Re-query CCDS DB by Nucleotide ID:NM_021788Re-query CCDS DB by Protein ID:NP_068560Link to BLAST:NP_068560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_068560.1 220 O88574 220 100% 0 0

Chromosomal Locations for CCDS 22316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 57482928 57483050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57485042 57485140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57485510 57485635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 57487252 57487566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGAACGGCTTCACTCCGGAGGAGATGAGCCGAGGCGGGGACGCGGCCGCCGCCGTGGCCGCGGTGGTCG
CT
GCTGCGGCTGCCGCCGCCTCGGCGGGGAATGGGAACGCAGCCGGCGGTGGGGCAGAGGTACCCGGTGC
C
GGTGCAGTGTCAGCTTCTGGGCCACCTGGAGCGGCCGGTCCCGGCCCTGGGCAACTCTGTTGTTTGCGG
GAG
GACGGTGAGCGGTGCGGGCGCGCGGCAGGCAACGCCAGCTTCAGCAAAAGGATCCAGAAGAGCATCT
CT
CAGAAGAAGGTGAAGATCGAGCTGGATAAGAGTGCAAGGCATCTTTACATTTGTGACTATCATAAGAA
C
TTAATTCAGAGCGTTCGGAACAGAAGGAAGAGGAAAGGAAGCGATGATGATGGGGGAGACTCGCCTGTT
CAG
GACATCGACACTCCAGAGGTTGATTTGTACCAATTACAAGTAAATACACTTAGAAGATACAAAAGAC
AC
TTCAAGCTTCCAACCAGACCAGGTCTAAATAAAGCACAACTTGTTGAGATAGTTGGTTGCCACTTTAA
G
TCTATTCCAGTGAACGAAAAAGACACCTTAACATGTTTCATCTACTCAGTGAGGAACGACAAGAACAAA
TCG
GATCTCAAGGCCGACAGTGGTGTTCACTAG


Translation (220 aa):
MNGFTPEEMSRGGDAAAAVAAVVAAAAAAASAGNGNAAGGGAEVPGAGAVSASGPPGAAGPGPGQLCCLR
E
DGERCGRAAGNASFSKRIQKSISQKKVKIELDKS
ARHLYICDYHKNLIQSVRNRRKRKGSDDDGGDSPV
Q
DIDTPE
VDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFKSIPVNEKDTLTCFIYSVRNDKNK
S
DLKADSGVH




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser