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Report for CCDS22221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22221.1 Public Mus musculus 8 Tti2 23 108 98 CCDS HistoryNCBI Gene:234138Re-query CCDS DB by CCDS ID:22221.1Re-query CCDS DB by GeneID:234138See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22221.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098842.2 ENSMUSP00000096441.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098842.2Link to Ensembl Protein Viewer:ENSMUSP00000096441.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000098842Re-query CCDS DB by Protein ID:ENSMUSP00000096441
Original member Current member EBI ENSMUST00000209986.1 ENSMUSP00000147846.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209986.1Link to Ensembl Protein Viewer:ENSMUSP00000147846.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209986Re-query CCDS DB by Protein ID:ENSMUSP00000147846
Original member Current member EBI ENSMUST00000209851.1 ENSMUSP00000148056.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209851.1Link to Ensembl Protein Viewer:ENSMUSP00000148056.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000209851Re-query CCDS DB by Protein ID:ENSMUSP00000148056
Original member Current member NCBI NM_144927.3 NP_659176.2 Accepted alive Link to Nucleotide Sequence:NM_144927.3Link to Protein Sequence:NP_659176.2Re-query CCDS DB by Nucleotide ID:NM_144927Re-query CCDS DB by Protein ID:NP_659176Link to BLAST:NP_659176.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659176.2 512 Q8BGV4 512 100% 0 0

Chromosomal Locations for CCDS 22221.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 31150850 31151499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31153509 31153695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31154214 31154306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31155514 31155701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31155778 31155921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31158593 31158755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 31159882 31159995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGAAGCTGGACAGTGCCGAAGAGAAGTCGGGGGTCGGCTGCTCCCTGCCTGCAGAGGGCTCTCCCCCGG
CCCTCGAACCAGCCTTCTCCAAGATTCTGAACCGTCTCAGCCGCCCAAAGTCATCAGGACAGGGCGGCGC
AAGAAATGCGGCTCTTAAAGACCTCGGCGCTTTAATAGAAGCCGCCGAAGGTGACAGATTCTTTGAGGGG
AGTGGGAGTGGGGGATCCCTCCGGGGGATGCCCGAGATCCTGGGGCAGGTGGTGAGAGCCCTGGAGAAGT
TCGCAGCACCCGAGGAGAAGGCAGATGGGGTCGAAGAGCATCCCGAAGTGCCCGAGAAGGCGACTGAAGT
TGGCTCACTGTTTCTAAAGCTGTTGGGGAAGGTTGAAGCTGCCAAGAGTTCTCCCGACTGCCCTGCGTGG
AAGACAGGCCTCCGTCACATGTCAGGACCCGTGTATATTTTTGCCATCACTCACAGATTGAAGCAGCCAT
GGACCAGTCCAGCATCTCAGCATGTTGCTGGTGAGGTGCTGTCTTTATTGCTTAGAGTTACTGAGTGCAG
TTCTGTGGCAGGATTCCTATGCGGAGAAAATGAAGACGATCGAGGGAGATTTGCTGTGGTCTTGGGGCTT
CTTAAGCCCCATTTGAATAAGGAAACCTGGAAGAAGAATCCTGCTGTCAAACATGTTTTCTCGTGGACTC
TCCAACAAGTCACTCAGCCCTGGCTGAATCAGCATCTAGAAAAGATACTTCCTCCGTCTTTGCTCATCTC
AGATGACTATCAGACAGAGAATAAAATCCTGGGTGTCCAGTGCCTCCATCACATTGTGGTTACTGTGCCA
GCTGCGGACTTGCTGCAGTATAACAGAGCCCAGGTCCTGTACCACGCCCTCTTCAATCACCTGTACATGC
CTGAGCACCACCTCATTCAGGCTGTGCTCCTGTGCCTCCTAGACTTGTTCCCTGTCCTAGAGAAGGCTCT
GCACTGGAAGGGAGACACAGCTCGAGTCACCACACACTGTCATGAAGTGTTACAGCTGATCCTCACGCAC
ATGGAACCAGAGCACCGCCTCCTCCTACGGAGGACCTATGCCAGACACCTGCCAGCCTTCGTGAAGAGGT
TGGGGATCCTAACTGTCCGGCACTTGAAGAGGCTGGAGCAAGTTATCCTTGGTTATCTGGAGGTTTATGA
TGAACCAGAAGATGAAACTAGGTTGAAGATCCTGGAAACCCTGAAACTTGTCATGCAGTATACTTGGCCC
AGAATTCCCTGCAGAGTTGTGGTCTTACTGAAGGCTCTCCTGAAACTCATATGTGATATATCGAGGGATA
CGATCCCCACAACCGAGGCCGCTAAGAGTACAATGCTCCAGGAAGCCACAGACTGCCTGATTCTCCTGGA
CCACTGTTCCCAGGGGCAGGTGAAGGGTCTTCTGGCTAAAATTGCAGTATCCTGTGAAGACAGCACAGTG
GTGAGCTGCATCAGGAAGGTGCAGCAGGGCTCTGCAGATTCTCCTGGCGATGACACTGAAGGTGACTAA

Translation (512 aa):
MKLDSAEEKSGVGCSLPAEGSPPALEPAFSKILNRLSRPKSSGQGGARNAALKDLGALIEAAEGDRFFEG
SGSGGSLRGMPEILGQVVRALEKFAAPEEKADGVEEHPEVPEKATEVGSLFLKLLGKVEAAKSSPDCPAW
KTGLRHMSGPVYIFAITHRLKQPWTSPASQHVAGEVLSLLLRVTECSSVAGFLCGENEDDRGRFAVVLGL
LKPHLNKETWKKNPAVKHVFSWTLQQVTQPWLNQHLEKILPPSLLISDDYQTENKILGVQCLHHIVVTVP
AADLLQYNRAQVLYHALFNHLYMPEHHLIQAVLLCLLDLFPVLEKALHWKGDTARVTTHCHEVLQLILTH
MEPEHRLLLRRTYARHLPAFVKRLGILTVRHLKRLEQVILGYLEVYDEPEDETRLKILETLKLVMQYTWP
RIPCRVVVLLKALLKLICDISRDTIPTTEAAKSTMLQEATDCLILLDHCSQGQVKGLLAKIAVSCEDSTV
VSCIRKVQQGSADSPGDDTEGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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