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Report for CCDS22094.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22094.1 Public Mus musculus 8 Tnfsf13b 23 108 98 CCDS HistoryNCBI Gene:24099Re-query CCDS DB by CCDS ID:22094.1Re-query CCDS DB by GeneID:24099See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22094.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207792.1 ENSMUSP00000146694.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207792.1Link to Ensembl Protein Viewer:ENSMUSP00000146694.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000207792Re-query CCDS DB by Protein ID:ENSMUSP00000146694
Original member NCBI NM_033622.2 NP_296371.1 Updated not alive Link to Nucleotide Sequence:NM_033622.2Link to Protein Sequence:NP_296371.1Re-query CCDS DB by Nucleotide ID:NM_033622Re-query CCDS DB by Protein ID:NP_296371
Current member NCBI NM_033622.3 NP_296371.1 Accepted alive Link to Nucleotide Sequence:NM_033622.3Link to Protein Sequence:NP_296371.1Re-query CCDS DB by Nucleotide ID:NM_033622Re-query CCDS DB by Protein ID:NP_296371Link to BLAST:NP_296371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_296371.1 309 Q9WU72-1 309 100% 0 0

Chromosomal Locations for CCDS 22094.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 10006843 10007160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10007250 10007334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10014169 10014261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10021373 10021429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10031310 10031422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10031506 10031656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 10035329 10035441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGATGAGTCTGCAAAGACCCTGCCACCACCGTGCCTCTGTTTTTGCTCCGAGAAAGGAGAAGATATGA
AAGTGGGATATGATCCCATCACTCCGCAGAAGGAGGAGGGTGCCTGGTTTGGGATCTGCAGGGATGGAAG
GCTGCTGGCTGCTACCCTCCTGCTGGCCCTGTTGTCCAGCAGTTTCACAGCGATGTCCTTGTACCAGTTG
GCTGCCTTGCAAGCAGACCTGATGAACCTGCGCATGGAGCTGCAGAGCTACCGAGGTTCAGCAACACCAG
CCGCCGCGGGTGCTCCAGAGTTGACCGCTGGAGTCAAACTCCTGACACCGGCAGCTCCTCGACCCCACAA
CTCCAGCCGCGGCCACAGGAACAGACGCGCTTTCCAGGGACCAGAGGAAACAGAACAAGATGTAGACCTC
TCAGCTCCTCCTGCACCATGCCTGCCTGGATGCCGCCATTCTCAACATGATGATAATGGAATGAACCTCA
GAAACATCATTCAAGACTGTCTGCAGCTGATTGCAGACAGCGACACGCCGACTATACGAAAAGGAACTTA
CACATTTGTTCCATGGCTTCTCAGCTTTAAAAGAGGAAATGCCTTGGAGGAGAAAGAGAACAAAATAGTG
GTGAGGCAAACAGGCTATTTCTTCATCTACAGCCAGGTTCTATACACGGACCCCATCTTTGCTATGGGTC
ATGTCATCCAGAGGAAGAAAGTACACGTCTTTGGGGACGAGCTGAGCCTGGTGACCCTGTTCCGATGTAT
TCAGAATATGCCCAAAACACTGCCCAACAATTCCTGCTACTCGGCTGGCATCGCGAGGCTGGAAGAAGGA
GATGAGATTCAGCTTGCAATTCCTCGGGAGAATGCACAGATTTCACGCAACGGAGACGACACCTTCTTTG
GTGCCCTAAAACTGCTGTAA

Translation (309 aa):
MDESAKTLPPPCLCFCSEKGEDMKVGYDPITPQKEEGAWFGICRDGRLLAATLLLALLSSSFTAMSLYQL
AALQADLMNLRMELQSYRGSATPAAAGAPELTAGVKLLTPAAPRPHNSSRGHRNRRAFQGPEETEQDVDL
SAPPAPCLPGCRHSQHDDNGMNLRNIIQDCLQLIADSDTPTIRKGTYTFVPWLLSFKRGNALEEKENKIV
VRQTGYFFIYSQVLYTDPIFAMGHVIQRKKVHVFGDELSLVTLFRCIQNMPKTLPNNSCYSAGIARLEEG
DEIQLAIPRENAQISRNGDDTFFGALKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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