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Report for CCDS21937.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21937.1 Public Mus musculus 7 Fank1 23 108 98 CCDS HistoryNCBI Gene:66930Re-query CCDS DB by CCDS ID:21937.1Re-query CCDS DB by GeneID:66930See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21937.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065359.11 ENSMUSP00000069013.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065359.11Link to Ensembl Protein Viewer:ENSMUSP00000069013.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000065359Re-query CCDS DB by Protein ID:ENSMUSP00000069013
Original member NCBI NM_025850.2 NP_080126.1 Updated not alive Link to Nucleotide Sequence:NM_025850.2Link to Protein Sequence:NP_080126.1Re-query CCDS DB by Nucleotide ID:NM_025850Re-query CCDS DB by Protein ID:NP_080126
Current member NCBI NM_025850.3 NP_080126.1 Accepted alive Link to Nucleotide Sequence:NM_025850.3Link to Protein Sequence:NP_080126.1Re-query CCDS DB by Nucleotide ID:NM_025850Re-query CCDS DB by Protein ID:NP_080126Link to BLAST:NP_080126.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080126.1 344 Q9DAM9 344 100% 0 0

Chromosomal Locations for CCDS 21937.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 133776958 133776970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133853166 133853343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133862103 133862227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133868118 133868199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133869278 133869352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133870022 133870087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133876748 133876913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133879879 133880022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133880272 133880349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133880444 133880488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 133880598 133880660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGAGCCCCACAAAGTCGTGCCACTCTCAAAGCCGCATCCTCCTGTTGTGGGCAAGGTGACTCATCACA
GCATCGAATTGTACTGGGATCTGGAACAGAAAGAGAAACGGCAAGGACCACAGGAGCAGTGGCTTCGGTT
CTCCATTGAGGAGGAGGACCCCAAGATGCACAGCTACGGTGTCATTTACACGGGTTATGCAACAAGGCAT
GTGGTTGAAGGCCTAGAACCAAGGACACTATACAAATTTCGACTGAAGGTCACCAGCCCCTCTGGAGAAT
ATGAGTACAGCCCAGTCGTCTCGGTGGCTACGACCCGGGAGCCCATAAGTAGCGAACACTTTCATCGTGC
TGTCAGTGTGAACGATGAAGATCTCCTGCTTCGAATTTTGGAAGGAGGCCATGTCATGATTGACGTGCCC
AACAAATTTGGCTTTACCGCTCTCATGGTTGCTGCTCAGAAAGGTTACACCAGGCTTGTGAAGATCCTAG
TTTCCAATGGCACAGATGTGAATCTGAAGAACGGAAGTGGCAAGGACAGTCTCATGCTTGCATGCTACGC
GGGGCACCTAGATGTTGTCAAATACCTCCGGAGACACGGAGCTTCTTGGGAGGCTCGAGACCTCGGAGGC
TGCACAGCTCTGCACTGGGCTGCAGATGGAGGCCATTGCTCTGTGATTGACTGGATGATAAAGGACGGTT
GTGAGGTAGATGTTGTAGACACTGGTTCAGGATGGACGCCACTCATGAGAGTCTCCGCTGTGACAGGAAG
CCAGAAGGTGGCCTCACTCCTCATCGAGGCTGGGGCTGACGTGAACATCAAGGACAAAGATGGAAAGACG
CCTCTCATGGTCGCTGTCTTAAATAATCACGAACAGCTAGTTCAGCTACTTCTTGATAAAGGGGCAGATG
CAACTGTGAAAAATGAGTTTGGCAAAGGTGTCCTAGAAATGGCCAGAGTTTTTGACAGACAGAATGTACT
TTCCTTACTGGAAGAAAAGAAAAAAAAGATGCCAAGGAAGTCCTCTGTCCACTGA

Translation (344 aa):
MEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRH
VVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTREPISSEHFHRAVSVNDEDLLLRILEGGHVMIDVP
NKFGFTALMVAAQKGYTRLVKILVSNGTDVNLKNGSGKDSLMLACYAGHLDVVKYLRRHGASWEARDLGG
CTALHWAADGGHCSVIDWMIKDGCEVDVVDTGSGWTPLMRVSAVTGSQKVASLLIEAGADVNIKDKDGKT
PLMVAVLNNHEQLVQLLLDKGADATVKNEFGKGVLEMARVFDRQNVLSLLEEKKKKMPRKSSVH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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