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Report for CCDS21629.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21629.1 Public Mus musculus 7 Usp17la 23 108 98 CCDS HistoryNCBI Gene:13531Re-query CCDS DB by CCDS ID:21629.1Re-query CCDS DB by GeneID:13531See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21629.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067695.7 ENSMUSP00000068997.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067695.7Link to Ensembl Protein Viewer:ENSMUSP00000068997.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000067695Re-query CCDS DB by Protein ID:ENSMUSP00000068997
Original member Current member NCBI NM_007887.2 NP_031913.1 Accepted alive Link to Nucleotide Sequence:NM_007887.2Link to Protein Sequence:NP_031913.1Re-query CCDS DB by Nucleotide ID:NM_007887Re-query CCDS DB by Protein ID:NP_031913Link to BLAST:NP_031913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031913.1 526 Q61068 526 100% 0 0

Chromosomal Locations for CCDS 21629.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 104859393 104859420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 104860218 104861770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGTGGTTGCTCTTTCCTTCCCAGAAGCAGATCCAGCCCTATCATCTCCTGATGCCCCAGAGCTGCATC
AGGATGAAGCTCAGGTGGTGGAGGAGCTAACTGTCAATGGAAAGCACAGTCTGAGTTGGGAGAGTCCCCA
AGGACCAGGATGCGGGCTCCAGAACACAGGCAACAGCTGCTACCTGAATGCAGCCCTGCAGTGCTTGACA
CACACACCACCTCTAGCTGACTACATGCTGTCCCAGGAGCACAGTCAAACCTGTTGTTCCCCAGAAGGCT
GTAAGTTGTGTGCTATGGAAGCCCTTGTGACCCAGAGTCTCCTGCACTCTCACTCGGGGGATGTCATGAA
GCCCTCCCATATTTTGACCTCTGCCTTCCACAAGCACCAGCAGGAAGATGCCCACGAGTTTCTCATGTTC
ACCTTGGAAACAATGCATGAATCCTGCCTTCAAGTGCACAGACAATCAAAACCCACCTCTGAGGACAGCT
CACCCATTCATGACATATTTGGAGGCTGGTGGAGGTCTCAGATCAAGTGTCTCCTTTGCCAGGGTACCTC
AGATACCTATGATCGCTTCCTGGACATCCCCCTGGATATCAGCTCAGCTCAGAGTGTAAAGCAAGCCTTG
TGGGATACAGAGAAGTCAGAAGAGCTATGTGGAGATAATGCCTACTACTGTGGTAAGTGTAGACAGAAGA
TGCCAGCTTCTAAGACCCTGCATGTTCATATTGCTCCAAAGGTACTCATGGTAGTGTTAAATCGCTTCTC
AGCCTTCACGGGTAACAAGTTAGACAGAAAAGTAAGTTACCCGGAGTTCCTTGACCTGAAGCCATACCTG
TCTGAGCCTACTGGAGGACCTTTGCCTTATGCCCTCTATGCCGTCCTGGTCCATGATGGTGCGACTTCTC
ACAGTGGACATTACTTCTGTTGTGTCAAAGCTGGTCATGGGAAGTGGTACAAGATGGATGATACTAAAGT
CACCAGGTGTGATGTGACTTCTGTCCTGAATGAGAATGCCTATGTGCTCTTCTATGTGCAGCAGGCCAAC
CTCAAACAGGTCAGTATTGACATGCCAGAGGGAAGAATAAATGAGGTTCTTGACCCTGAATACCAGCTGA
AGAAATCACGGAGAAAAAAGCATAAGAAGAAAAGCCCTTTCACAGAAGATTTAGGAGAGCCCTGCGAAAA
CAGGGATAAGAGAGCAATTAAAGAAACCTCCTTAGGAAAGGGGAAAGTGCTTCAGGAAGTGAACCACAAG
AAAGCTGGGCAGAAACACGGGAATACCAAACTCATGCCTCAGAAACAGAACCACCAGAAAGCTGGGCAGA
ACCTCAGGAATACTGAAGTTGAACTTGATCTGCCTGCTGATGCAATTGTGATTCACCAGCCCAGATCCAC
TGCAAACTGGGGCAGGGATTCTCCAGACAAGGAGAATCAACCCTTGCACAATGCTGACAGGCTCCTCACC
TCTCAGGGCCCTGTGAACACTTGGCAGCTCTGTAGACAGGAAGGGAGACGAAGATCGAAGAAGGGGCAGA
ACAAGAACAAGCAAGGGCAGAGGCTTCTGCTTGTTTGCTAG

Translation (526 aa):
MVVALSFPEADPALSSPDAPELHQDEAQVVEELTVNGKHSLSWESPQGPGCGLQNTGNSCYLNAALQCLT
HTPPLADYMLSQEHSQTCCSPEGCKLCAMEALVTQSLLHSHSGDVMKPSHILTSAFHKHQQEDAHEFLMF
TLETMHESCLQVHRQSKPTSEDSSPIHDIFGGWWRSQIKCLLCQGTSDTYDRFLDIPLDISSAQSVKQAL
WDTEKSEELCGDNAYYCGKCRQKMPASKTLHVHIAPKVLMVVLNRFSAFTGNKLDRKVSYPEFLDLKPYL
SEPTGGPLPYALYAVLVHDGATSHSGHYFCCVKAGHGKWYKMDDTKVTRCDVTSVLNENAYVLFYVQQAN
LKQVSIDMPEGRINEVLDPEYQLKKSRRKKHKKKSPFTEDLGEPCENRDKRAIKETSLGKGKVLQEVNHK
KAGQKHGNTKLMPQKQNHQKAGQNLRNTEVELDLPADAIVIHQPRSTANWGRDSPDKENQPLHNADRLLT
SQGPVNTWQLCRQEGRRRSKKGQNKNKQGQRLLLVC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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