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Report for CCDS21332.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21332.2 Public Mus musculus 7 Trpm1 23 108 98 CCDS HistoryNCBI Gene:17364Re-query CCDS DB by CCDS ID:21332.2Re-query CCDS DB by GeneID:17364See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21332.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085222.11 ENSMUSP00000082318.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085222.11Link to Ensembl Protein Viewer:ENSMUSP00000082318.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000085222Re-query CCDS DB by Protein ID:ENSMUSP00000082318
Original member Current member NCBI NM_001039104.2 NP_001034193.2 Accepted alive Link to Nucleotide Sequence:NM_001039104.2Link to Protein Sequence:NP_001034193.2Re-query CCDS DB by Nucleotide ID:NM_001039104Re-query CCDS DB by Protein ID:NP_001034193Link to BLAST:NP_001034193.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034193.2 1622 Q2TV84-1 1622 100% 0 0

Chromosomal Locations for CCDS 21332.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 64154032 64154106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64197277 64197356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64199163 64199358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64201887 64202100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64203006 64203130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64204422 64204593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64208276 64208450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64208869 64208992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64209957 64210029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64210838 64210938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64217490 64217660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64219108 64219242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64220242 64220292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64223691 64223831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64224626 64224655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64226716 64227008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64230057 64230285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64234958 64235080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64235746 64235877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64237656 64237784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64240420 64240671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64243423 64243597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64244850 64244870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64245944 64246088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64247362 64247564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64248186 64248318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 64267960 64269130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4869 nt):
ATGGGGTCCATGAGGAAGATGAGCAGCTCCTTCAAGCGTGGTTCAATCAAGAGCTCCACATCAGGGTCCC
AGAAGGGTCAGAAAGCATGGATAGAGAAGACATTTTGCAAAAGGGAATGCATCTTTGTAATTCCCAGTAC
AAAAGACCCTAACAGATGTTGCTGTGGTCAGCTCACTAACCAGCACATCCCCCCTCTGCCGAGTGGGGCT
CCCAGCACAACAGGAGAGGACACCAAGCAGGCAGACACGCAGTCCGGGAAATGGTCTGTCAGCAAACACA
CCCAGAGCTACCCAACAGACTCCTATGGGATTCTTGAATTCCAGGGTGGGGGTTACTCCAATAAAGCCAT
GTACATCCGAGTCTCCTACGACACCAAGCCAGATTCCCTGCTCCACCTCATGGTGAAGGACTGGCAGCTG
GAGCTCCCGAAGCTCTTGATATCTGTGCACGGAGGCCTCCAAAGCTTCGAGATGCAGCCCAAACTGAAGC
AGGTGTTTGGGAAAGGTCTGATCAAGGCTGCCATGACCACGGGGGCGTGGATCTTCACCGGGGGTGTGAG
CACTGGTGTCGTCAGCCATGTGGGGGATGCCTTGAAAGACCACTCCTCCAAGTCCAGAGGCCGGCTCTGT
GCTATAGGAATTGCTCCCTGGGGCATGGTGGAGAACAAGGAAGACCTGATTGGAAAAGATGTAACAAGAG
TCTATCAGACCATGTCCAACCCTCTGAGCAAGCTCTCTGTGCTCAACAATTCCCACACTCACTTCATCTT
GGCTGACAACGGCACCCTGGGCAAGTATGGTGCTGAGGTGAAGCTTCGAAGACAGCTGGAAAAACACATC
TCCCTGCAGAAGATCAACACAAGGCTGGGCCAGGGTGTACCTGTCGTGGGCCTAGTGGTAGAAGGTGGTC
CTAACGTGGTTTCTATCGTCCTGGAGTATCTCAAAGAAGACCCTCCTGTCCCTGTGGTGGTTTGCGATGG
CAGTGGACGTGCCTCTGACATTTTGTCCTTCGCACACAAATACTGCGACGAAGGAGGAGTCATAAACGAG
TCCCTGCGGGACCAGCTTCTAGTTACCATTCAGAAAACATTTAATTACAGCAAGTCCCAGTCGTATCAGC
TGTTTGCAATTATCATGGAGTGCATGAAGAAGAAAGAACTCGTCACTGTGTTTCGGATGGGTTCCGAGGG
TCAGCAAGATGTCGAGATGGCAATTTTAACTGCCTTGCTCAAAGGAACCAACGCATCAGCTCCAGATCAG
CTGAGCTTGGCCCTGGCTTGGAACCGGGTCGACATAGCGCGAAGCCAGATCTTCGTCTTTGGCCCACACT
GGCCGCCACTGGGAAGCCTGGCCCCTCCTGTGGACACCAAAGCCACAGAGAAGGAAAAGAAGCCACCCAC
AGCCACCACCAAGGGGAGAGGAAAAGGAAAAGGCAAGAAGAAAGGCAAAGTGAAAGAGGAAGTGGAGGAA
GAGACGGACCCCCGGAAGCTTGAGCTGCTCAACTGGGTGAATGCCCTGGAGCAAGCCATGCTGGATGCTC
TTGTCCTAGATCGGGTGGACTTTGTAAAGCTCCTGATTGAAAACGGAGTGAACATGCAGCATTTCCTCAC
CATCCCGAGGCTGGAGGAGCTATACAACACCAGACTGGGCCCACCAAACACCCTTCATCTGCTGGTGCGG
GATGTAAAGAAGAGCAACCTTCCACCTGATTACCACATCAGCCTCATTGATATAGGACTGGTGCTGGAGT
ACCTCATGGGCGGTGCCTACCGCTGCAACTACACTCGGAAAAGCTTCCGGACTCTCTACAACAACTTGTT
TGGCCCTAAGAGGCCGAAAGCACTTAAGCTTCTGGGAATGGAAGATGATGAACCCCCAGCCAAAGGCAAG
AAGAAAAAGAAGAAGAAGAAAGAGGAAGAGATTGACATCGACGTGGACGACCCCGCCGTGAGTAGGTTCC
AGTACCCGTTCCATGAGCTCATGGTATGGGCCGTGCTCATGAAGCGCCAGAAGATGGCGGTCTTCCTGTG
GCAGCGTGGGGAAGAGTGCATGGCGAAGGCCTTGGTGGCCTGCAAGCTCTACAAGGCCATGGCCCACGAG
TCCTCCGAGAGCGAGCTGGTGGATGACATCTCCCAGGATCTGGACAACAATTCCAAAGATTTTGGCCAGC
TCGCTGTGGAGCTGTTAGACCAGTCTTACAAGCACGATGAGCAGGTTGCCATGAAACTTCTGACCTACGA
GCTCAAGAACTGGAGCAACTCAACCTGCCTGAAGCTGGCTGTGGCAGCCAAGCACCGGGACTTCATTGCT
CACACCTGCAGCCAGATGCTGCTGACAGACATGTGGATGGGAAGGCTTCGCATGAGGAAGAACCCTGGCC
TGAAGGTCATCATGGGGATCCTTATCCCACCCACCATCTTGTTTTTGGAATTCCGTACATATGATGACTT
CTCCTATCAAACATCCAAGGAGAACGAAGATGGCAAAGAAAAGGAAGAAGAGAATGTGGATGCAAATGCA
GATGCTGGCTCGAGAAAGGGGGATGAGGAGAATGAGCACAAAAAGCAGAGGAGCATTCCCATTGGAACAA
AGATCTGTGAATTCTATAATGCGCCCATTGTCAAGTTCTGGTTTTACACAATTTCCTACTTGGGCTACTT
GCTGCTGTTCAATTATGTCATCCTGGTGCGGATGGATGGATGGCCATCACCCCAAGAATGGATTGTCATC
TCCTACATTGTGAGCCTTGCATTGGAGAAAATACGAGAGATCCTCATGTCGGAACCAGGCAAACTCAGCC
AGAAAATCAAAGTGTGGCTCCAGGAGTACTGGAACATCACAGACCTCGTGGCCATCTCCATGTTCATGGT
TGGGGCCATCCTTCGTCTCCAGAGCCAGCCATACATGGGCTATGGTCGGGTCATCTACTGTGTGGATATC
ATCCTCTGGTACATCCGAGTGTTAGACATCTTTGGTGTCAACAAATATCTTGGTCCCTATGTGATGATGA
TTGGAAAGATGATGATTGACATGCTCTACTTTGTGGTCATTATGCTGGTTGTACTGATGAGTTTTGGAGT
GGCTCGGCAAGCCATCTTGCATCCGGAGGAGAAGCCTTCCTGGAAACTGGCCCGAAACATCTTCTACATG
CCATACTGGATGATCTACGGAGAGGTGTTTGCAGACCAGATAGACCTCTACGCCATGGAAATCAACCCTC
CTTGTGGTGAGAATCTCTATGATGAGGAAGGCAAGAGGCTCCCTCCCTGCATCCCTGGTGCCTGGCTCAC
ACCTGCCCTCATGGCCTGTTATCTCCTGGTGGCCAATATCCTGCTGGTCAACCTACTGATTGCTGTTTTC
AACAATACCTTCTTTGAAGTCAAGTCAATATCCAATCAAGTGTGGAAGTTCCAGCGATACCAGCTGATCA
TGACATTTCATGACAGGCCGGTCCTGCCCCCACCAATGATCATCTTAAGTCACATCTATATCATCATTAT
GCGCCTCAGCGGTCGCTGCAGAAAAAAGAGAGAGGGGGACCAGGAGGAGCGGGACCGTGGGTTGAAGTTG
TTCCTTAGCGACGAAGAACTGAAAAAACTGCATGAGTTTGAGGAGCAGTGCGTGCAGGAGCACTTCCGGG
AAAAGGAGGATGAGCAGCAGTCGTCCAGCGACGAGCGCATCCGGGTCACAAGCGAGAGGGTTGAAAATAT
GTCAATGAGATTGGAGGAAATCAACGAAAGAGAAAATTTCATGAAAACTTCTCTGCAGACTGTTGACCTT
CGGCTCTCTCAGCTGGAGGAGCTATCTGGCAGGATGGTGAGCGCTCTGGAGAATCTGGCAGGCATCGACA
GGTCTGATCTGATCCAGGCTCGATCTCGAGCATCCTCCGAATGCGAGGCCACCTACCTGCTGCGGCAGAG
CAGCATCAACAGTGCCGACGGCTACAGCTTGTACCGCTACCATTTCAATGGCGAGGAGCTTCTGTTTGAG
GAGCCTGCTCTCTCCACTTCGCCAGGGACAGCGTTCCGGAAAAAAACCTACTCCTTTCGTGTGAAGGATG
AGGATGCAAAGTCGCACCTGGACCAGCCCAGCAACCTGCACCACACCCCTGGCCCCAGCCCACCTGCCAC
GCCAGGCCGCAGCCGGCTCGCCCTTGAAGGTCCCTTGAGCACAGAGCTGAGACCTGGATCGGACCCTGGC
ATCTCCGCAGGCGAGTTCGATCCGCGGGCGGATTTCAAGAGCACGGAAGCTGCACCAAGTCTGAACGCAG
CGGGTGTTACAGGCACTCAACTGACTGTCGAAAGCACCGATTCCCACCCTCTGCGGGAGAGCAAACTCGT
GCGCTACTACCCCGGAGACCCTAACACCTACAAAACAATGAAGTCCAGAAGCTTCGTCTATACTGAAGGA
AGAAAGCTAGTCCGAGGTCTTAGCAACTGGAGTGCAGAGTACAGTTCAATCATGGACCAAGCATGGAACG
CGACAGAATGGAGATGTCAAGTTCAAAGGATCACGCGCTCCCGCAGCACAGACATCCCATACATCGTGTC
CGAAGCAGCCTCGCAAGACGAGCTTGAAGATGAGCACAGAGGATCTCTTCTGGATCCTCAGATCTCCCGT
TCAGCCCTCACCGTCTCCGACAGGCCAGAAAAGGAAAACTTACTCTCTGTGAAGCCACATCAGACTTTAG
GATTCCCCTGCCTACGGTCAAGAAGTTTACATGGCCGTCCTAGGAGTGCTGAGCCCGCTCCTAGCAAATT
AGACAGGGCAGGACATGCCAGCAGCACTAGCAACTTAGCAGTTATGTCAGTTGTTCCAGAGGGACAAAAC
ACCCAGCAAGAGAAAAGAAGCGCGGAAACTGAGTGCTGA

Translation (1622 aa):
MGSMRKMSSSFKRGSIKSSTSGSQKGQKAWIEKTFCKRECIFVIPSTKDPNRCCCGQLTNQHIPPLPSGA
PSTTGEDTKQADTQSGKWSVSKHTQSYPTDSYGILEFQGGGYSNKAMYIRVSYDTKPDSLLHLMVKDWQL
ELPKLLISVHGGLQSFEMQPKLKQVFGKGLIKAAMTTGAWIFTGGVSTGVVSHVGDALKDHSSKSRGRLC
AIGIAPWGMVENKEDLIGKDVTRVYQTMSNPLSKLSVLNNSHTHFILADNGTLGKYGAEVKLRRQLEKHI
SLQKINTRLGQGVPVVGLVVEGGPNVVSIVLEYLKEDPPVPVVVCDGSGRASDILSFAHKYCDEGGVINE
SLRDQLLVTIQKTFNYSKSQSYQLFAIIMECMKKKELVTVFRMGSEGQQDVEMAILTALLKGTNASAPDQ
LSLALAWNRVDIARSQIFVFGPHWPPLGSLAPPVDTKATEKEKKPPTATTKGRGKGKGKKKGKVKEEVEE
ETDPRKLELLNWVNALEQAMLDALVLDRVDFVKLLIENGVNMQHFLTIPRLEELYNTRLGPPNTLHLLVR
DVKKSNLPPDYHISLIDIGLVLEYLMGGAYRCNYTRKSFRTLYNNLFGPKRPKALKLLGMEDDEPPAKGK
KKKKKKKEEEIDIDVDDPAVSRFQYPFHELMVWAVLMKRQKMAVFLWQRGEECMAKALVACKLYKAMAHE
SSESELVDDISQDLDNNSKDFGQLAVELLDQSYKHDEQVAMKLLTYELKNWSNSTCLKLAVAAKHRDFIA
HTCSQMLLTDMWMGRLRMRKNPGLKVIMGILIPPTILFLEFRTYDDFSYQTSKENEDGKEKEEENVDANA
DAGSRKGDEENEHKKQRSIPIGTKICEFYNAPIVKFWFYTISYLGYLLLFNYVILVRMDGWPSPQEWIVI
SYIVSLALEKIREILMSEPGKLSQKIKVWLQEYWNITDLVAISMFMVGAILRLQSQPYMGYGRVIYCVDI
ILWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPEEKPSWKLARNIFYM
PYWMIYGEVFADQIDLYAMEINPPCGENLYDEEGKRLPPCIPGAWLTPALMACYLLVANILLVNLLIAVF
NNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIILSHIYIIIMRLSGRCRKKREGDQEERDRGLKL
FLSDEELKKLHEFEEQCVQEHFREKEDEQQSSSDERIRVTSERVENMSMRLEEINERENFMKTSLQTVDL
RLSQLEELSGRMVSALENLAGIDRSDLIQARSRASSECEATYLLRQSSINSADGYSLYRYHFNGEELLFE
EPALSTSPGTAFRKKTYSFRVKDEDAKSHLDQPSNLHHTPGPSPPATPGRSRLALEGPLSTELRPGSDPG
ISAGEFDPRADFKSTEAAPSLNAAGVTGTQLTVESTDSHPLRESKLVRYYPGDPNTYKTMKSRSFVYTEG
RKLVRGLSNWSAEYSSIMDQAWNATEWRCQVQRITRSRSTDIPYIVSEAASQDELEDEHRGSLLDPQISR
SALTVSDRPEKENLLSVKPHQTLGFPCLRSRSLHGRPRSAEPAPSKLDRAGHASSTSNLAVMSVVPEGQN
TQQEKRSAETEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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