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Report for CCDS21071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21071.1 Public Mus musculus 7 Dpf1 23 108 98 CCDS HistoryNCBI Gene:29861Re-query CCDS DB by CCDS ID:21071.1Re-query CCDS DB by GeneID:29861See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049977.12 ENSMUSP00000054385.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049977.12Link to Ensembl Protein Viewer:ENSMUSP00000054385.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000049977Re-query CCDS DB by Protein ID:ENSMUSP00000054385
Original member NCBI NM_013874.2 NP_038902.1 Updated not alive Link to Nucleotide Sequence:NM_013874.2Link to Protein Sequence:NP_038902.1Re-query CCDS DB by Nucleotide ID:NM_013874Re-query CCDS DB by Protein ID:NP_038902
Current member NCBI NM_013874.3 NP_038902.1 Accepted alive Link to Nucleotide Sequence:NM_013874.3Link to Protein Sequence:NP_038902.1Re-query CCDS DB by Nucleotide ID:NM_013874Re-query CCDS DB by Protein ID:NP_038902Link to BLAST:NP_038902.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038902.1 388 Q9QX66-2 388 100% 0 0

Chromosomal Locations for CCDS 21071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 29304081 29304112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29309411 29309571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29309645 29309752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29311265 29311392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29311607 29311696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29312848 29312926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29313082 29313213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29314139 29314189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29314283 29314402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29315624 29315736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29316244 29316325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 29316481 29316551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGGCCACCGCCATTCAGAACCCGCTCAAGTCCCTTGGCGAGGACTTCTACCGGGAGGCCATCGAGCACT
GTCGCAGCTACAACGCGCGCCTGTGTGCCGAGCGCAGCCTGCGCCTGCCTTTCCTCGACTCGCAGACCGG
AGTGGCCCAGAACAACTGCTACATCTGGATGGAGAAGACCCACCGCGGGCCTGGTTTGGCCCCGGGACAG
ATCTACACTTACCCCGCCCGCTGTTGGAGGAAGAAACGGAGACTCAACATCCTGGAGGACCCCAGGCTCC
GGCCCTGCGAGTACAAGATCGATTGTGAGGCACCTCTGAAGAAGGAGGGTGGCCTCCCGGAAGGGCCAGT
CCTCGAGGCTCTGCTGTGTGCTGAGACTGGAGAGAAGAAAGTGGAGCTGAAGGAGGAGGAGACCATCATG
GACTGTCAGAAACAGCAGTTGCTGGAGTTTCCGCATGATCTCGAGGTAGAAGACTTGGAGGAAGACATTC
CCAGGAGGAAGAACAGGGCAAGAGGAAAGGCATATGGCATTGGAGGTCTCCGCAAACGCCAGGACACCGC
ATCCCTGGAGGACCGAGACAAGCCGTACGTCTGTGATATCTGTGGGAAGAGATATAAGAACCGGCCAGGA
CTCAGCTACCATTACACCCACACCCACCTGGCTGAGGAGGAGGGGGAGGAGCACACTGAACGCCACGCCC
TGCCTTTCCACCGGAAAAACAACCATAAACAGTTTTACAAAGAATTGGCCTGGGTCCCCGAGGCACAGAG
GAAACACACAGCCAAGAAAGCACCAGATGGCACTGTCATCCCCAATGGCTACTGTGACTTTTGCCTGGGG
GGCTCCAAGAAGACTGGGTGTCCCGAGGACCTCATCTCCTGTGCGGACTGTGGGCGATCAGGACATCCCT
CGTGTTTACAGTTCACGGTGAACATGACCGCGGCTGTGCGGACCTACCGCTGGCAGTGCATTGAATGCAA
GTCCTGCAGCCTGTGTGGCACCTCGGAGAATGACGACCAGCTGCTGTTCTGTGATGACTGCGATCGAGGT
TACCACATGTACTGCCTGAGCCCTCCCATGGCGGAGCCCCCGGAAGGGAGCTGGAGCTGCCACCTCTGTC
TCCGGCACTTGAAGGAAAAGGCCTCTGCTTACATCACCCTGACCTAG

Translation (388 aa):
MATAIQNPLKSLGEDFYREAIEHCRSYNARLCAERSLRLPFLDSQTGVAQNNCYIWMEKTHRGPGLAPGQ
IYTYPARCWRKKRRLNILEDPRLRPCEYKIDCEAPLKKEGGLPEGPVLEALLCAETGEKKVELKEEETIM
DCQKQQLLEFPHDLEVEDLEEDIPRRKNRARGKAYGIGGLRKRQDTASLEDRDKPYVCDICGKRYKNRPG
LSYHYTHTHLAEEEGEEHTERHALPFHRKNNHKQFYKELAWVPEAQRKHTAKKAPDGTVIPNGYCDFCLG
GSKKTGCPEDLISCADCGRSGHPSCLQFTVNMTAAVRTYRWQCIECKSCSLCGTSENDDQLLFCDDCDRG
YHMYCLSPPMAEPPEGSWSCHLCLRHLKEKASAYITLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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