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Report for CCDS20851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20851.1 Public Mus musculus 7 Arhgap35 23 108 98 CCDS HistoryNCBI Gene:232906Re-query CCDS DB by CCDS ID:20851.1Re-query CCDS DB by GeneID:232906See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075845.10 ENSMUSP00000075242.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075845.10Link to Ensembl Protein Viewer:ENSMUSP00000075242.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075845Re-query CCDS DB by Protein ID:ENSMUSP00000075242
Original member Current member EBI ENSMUST00000171937.1 ENSMUSP00000127379.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171937.1Link to Ensembl Protein Viewer:ENSMUSP00000127379.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171937Re-query CCDS DB by Protein ID:ENSMUSP00000127379
Original member Current member NCBI NM_172739.4 NP_766327.3 Accepted alive Link to Nucleotide Sequence:NM_172739.4Link to Protein Sequence:NP_766327.3Re-query CCDS DB by Nucleotide ID:NM_172739Re-query CCDS DB by Protein ID:NP_766327Link to BLAST:NP_766327.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766327.3 1499 Q91YM2 1499 100% 0 0

Chromosomal Locations for CCDS 20851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 16497653 16498010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16498584 16498689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16511193 16511324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16512408 16512485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16549063 16549207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 16561458 16565138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4500 nt):
ATGATGATGGCAAGAAAGCAAGATGTCCGCATCCCCACCTACAACATCAGTGTGGTGGGATTGTCAGGCA
CTGAGAAGGAGAAAGGCCAGTGCGGCATTGGGAAGTCTTGTCTGTGTAACCGCTTTGTGCGCCCAAGTGC
TGATGAGTTTCACCTGGACCACACTTCTGTCCTTAGCACCAGTGACTTTGGTGGGCGGGTGGTCAATAAT
GACCACTTTCTGTACTGGGGAGAAGTTAGCCGCTCCCTGGAGGATTGTGTGGAATGTAAGATGCACATTG
TGGAGCAGACTGAGTTTATTGACGATCAGACTTTTCAACCTCATCGAAGCACGGCACTGCAGCCCTACAT
CAAGAGAGCCGCAGCCACCAAGCTTGCTTCAGCTGAAAAACTCATGTATTTTTGCACTGACCAGCTGGGA
CTGGAGCAAGACTTTGAGCAGAAACAGATGCCAGATGGGAAGCTGCTGGTTGACGGTTTCCTTCTGGGCA
TTGATGTTAGCAGGGGCATGAACAGGAACTTCGATGATCAGCTCAAATTTGTCTCCAATCTCTACAATCA
GCTTGCAAAAACAAAAAAGCCCATAGTGGTAGTCCTGACTAAGTGTGATGAGGGCGTTGAGCGGTACATT
AGAGATGCACATACTTTTGCCTTAAGCAAAAAGAACCTCCAGGTTGTAGAGACCTCTGCAAGGTCCAATG
TGAATGTGGACTTGGCTTTCAGCACCTTAGTGCAACTCATTGATAAGAGTCGAGGGAAGACAAAAATCAT
CCCTTACTTTGAAGCTCTCAAGCAGCAGAGTCAGCAGATAGCTACAGCAAAGGACAAGTATGAGTGGTTA
GTGAGCCGCATTGTGAAAAATCACAATGAGAACTGGCCGAGTGTCAGCCGAAAGATGCAGGCCTCCCCTG
AGTACCAGGACTATGTCTACCTGGAAGGGACACAGAAGGCCAAGAAGCTCTTCCTGCAGCACATTCACCG
CCTCAAGCATGAGCATATTGAGCGTCGGAGAAAGCTGTACCTGGCAGCTCTGCCATTGGCTTTTGAAGCC
CTCATACCTAATCTAGATGAAGTGGACCACCTGAGCTGTATTAAAGCAAAAAAGCTGTTAGAGACCAAGC
CAGAGTTCTTAAAGTGGTTTGTTGTACTTGAAGAAACACCATGGGATGCCACCAGCCACATTGACAACAT
GGAAAATGAGCGGATTCCCTTTGACTTGATGGATACTGTCCCTGCTGAGCAGTTGTATGAGACCCACTTG
GAGAAGCTGAGGAACGAGAGGAAGAGAGCTGAGATGCGAAGGGCTTTCAAAGAAAACCTGGAGACCTCTC
CTTTCATAACTCCTGGGAAACCTTGGGAAGAAGCTCGTAGTTTTATTATGAATGAAGACTTCTACCAGTG
GCTGGAAGAATCTGTGTACATGGACATCTATGGCAAGCACCAAAAGCAGATTATAGACCGAGCAAAGGAA
GAGTTCCAAGAGTTGCTTTTGGAGTACTCAGAATTGTTTTATGAGCTGGAGCTGGACGCTAAGCCCAGCA
AGGAGAAGATGGGTGTCATCCAGGATGTTCTGGGCGAAGAGCAGAGATTTAAAGCATTGCAGAAGCTCCA
AGCAGAGCGTGATGCCCTCATTCTGAAGCACATCCATTTTGTGTACCACCCGACGAAGGAGACATGCCCA
AGCTGTCCAGCTTGTGTAGATGCTAAGATTGAACACTTGATCAGTTCTCGCTTTATCAGACCATCTGATC
GGAATCAGAAGAACTCTCTGTCTGACCTCAATATTGATAGGATCAATTTGGTTATCTTAGGCAAAGATGG
CCTTGCCCGAGAGTTGGCCAATGAAATTCGAGCTCTTTGTACAAATGATGACAAGTATGTAATAGATGGT
AAAATGTATGAGCTTTCTCTGAGGCCAATAGAGGGGAATGTCCGGCTTCCTGTGAACTCTTTCCAGACAC
CAACCTTCCAACCCCATGGCTGTCTCTGCCTTTACAATTCAAAGGAGTCACTGTCCTATGTGGTGGAGAG
TATAGAGAAGAGCAGAGAGTCTACACTGGGCAGGCGGGATAATCATTTAGTCCACCTTCCCTTGACCTTA
ATTTTAGTTAACAAGAGAGGGGACACAAGTGGAGAGACTCTGCACAGCTTGATACAGCAAGGTCAGCAGA
TTGCCAGCAAACTTCAGTGTGTCTTTCTTGATCCGGCTTCTGCTGGCATTGGTTATGGACGCAACATTAA
TGAGAAGCAGATCAGTCAAGTTCTGAAAGGACTCCTGGACTCCAAGCGCAACTTAAACCTGGTTAGCTCC
ACTGCAAGTATCAAAGATTTGGCTGATGTGGACCTTCGAATTGTCATGTGTCTGATGTGTGGTGATCCCT
TTAGTGCAGATGACGTTCTCTCTCCTGTCCTGCAATCCCAAACTTGTAAATCTTCCCACTGTGGGAGCAG
CAACTCTGTTTTACTTGAACTTCCAATTGGACTACACAAGAAGCGCATTGAGCTGTCTGTTCTTTCATAC
CATTCCTCATTTAGCATCCGAAAGAGCCGGTTGGTTCATGGGTACATTGTTTTTTATTCAGCCAAACGTA
AGGCCTCCTTGGCAATGTTACGTGCCTTTCTTTGTGAAGTGCAGGATATTATCCCCATCCAGCTTGTCGC
ACTCACTGATGGCGCTATAGATGTCCTAGACAATGACTTAAGTCGAGAGCAGCTAACAGAGGGAGAGGAA
ATTGCACAAGAGATTGACGGGAGATTCACAAGCATCCCTTGTAGCCAGCCCCAGCATAAACTTGAGCTCT
TTCATCCCTTTTTTAAAGATGTGGTGGAGAAAAAGAACATAATTGAGGCCACACATATGTATGATAATGT
AGCTGAGGCCTGCAGCACCACTGAGGAAGTGTTCAACTCCCCCAGAGCTGGCTCACCCCTCTGCAACTCA
AACTTACAGGACTCAGAAGAAGATGTGGAGCCTCCATCATACCACCTGTTTCGGGAAGATGCGACATTGC
CCTCCCTGTCCAAAGATCATTCCAAGTTCTCTATGGAACTGGAGGGAAATGACGGGCTATCTTTCATAAT
GAGCAATTTTGAGAGTAAACTGAACAACAAAGTACCTCCCCCAGTCAAACCAAAGCCTCCTGTGCATTTT
GATATCACAAAAGATCTTTCTTACTTAGACCAAGGCCATCGGGAGGGACAGAGGAAATCTATGTCTTCTA
GCCCCTGGATGCCTCAGGATGGGTTTGATCCTTCTGACTACGCAGAGCCCATGGATGCTGTGGTCAAGCC
AAGGAATGAGGAAGAAAACATATACTCGGTGCCCCACGACAGCACCCAGGGCAAGATCATTACCATTCGG
AACATCAACAAAGCCCAGTCCAATGGCAGTGGTAATGGTTCTGACAGTGAGATGGACACAAGTTCCCTAG
AGCGAGGCCGCAAGGTATCTGCAGTGAGTAAGCCTGTGCTGTACAGGACAAGATGCACTCGCCTGGGGCG
GTTTGCTAGTTACCGTACCAGCTTCAGTGTCGGGAGTGATGATGAGCTGGGACCCATCCGAAAGAAAGAG
GAGGACCAGGCATCCCAAGGTTATAAAGGGGACAATGCTGTCATTCCATATGAAACAGATGAGGACCCCA
GGAGGAGGAATATCCTTCGAAGTCTAAGAAGGAACACCAAGAAACCAAAGCCCAAACCCCGGCCATCCAT
CACAAAGGCAACCTGGGAGAGTAACTATTTTGGGGTGCCCTTAACAACAGTGGTGACTCCAGAGAAACCG
ATACCCATTTTCATTGAAAGATGCATTGAGTACATCGAAGCCACAGGACTAAGCACTGAAGGCATCTACC
GGGTCAGTGGAAACAAGTCAGAAATGGAAAGTTTGCAAAGACAGTTTGATCAAGACCACAATCTGGACCT
GGCAGAGAAAGACTTCACTGTGAACACTGTGGCAGGGGCCATGAAGAGTTTTTTCTCAGAGCTACCAGAC
CCCCTGGTACCATACAGCATGCAGATTGACTTGGTGGAAGCTCACAAAATCAACGACAGGGAACAGAAGC
TGCATGCTCTGAAGGAAGTGCTGAAGAAGTTCCCGAAGGAAAACCATGAAGTCTTCAAATATGTCATCTC
CCACCTGAACAAAGTCAGCCACAACAACAAGGTGAATCTTATGACCAGTGAGAACCTGTCCATCTGCTTC
TGGCCCACGCTGATGCGGCCTGACTTCAGCAGCATGGACGCGCTCACAGCCACGCGCTCCTACCAGACCA
TCATCGAGCTCTTCATCCAGCAGTGCCCCTTCTTCTTCTACAACCGGCCCATCAGCGAGCCTCCAGGGGC
TGCGCCTGGCTCCCCTTCAGCCATGGCTCCCACTGTTCCCTTCCTCACCTCTACACCTGCTACCAGTCAG
CCATCACCTCCCCAGTCACCTCCTCCAACCCCTCAGTCCCCAATGCAGCCATTGCTGTCCTCTCAGCTCC
AAGCCGAACACACGCTGTGA

Translation (1499 aa):
MMMARKQDVRIPTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNN
DHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLG
LEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI
RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLIDKSRGKTKIIPYFEALKQQSQQIATAKDKYEWL
VSRIVKNHNENWPSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKHEHIERRRKLYLAALPLAFEA
LIPNLDEVDHLSCIKAKKLLETKPEFLKWFVVLEETPWDATSHIDNMENERIPFDLMDTVPAEQLYETHL
EKLRNERKRAEMRRAFKENLETSPFITPGKPWEEARSFIMNEDFYQWLEESVYMDIYGKHQKQIIDRAKE
EFQELLLEYSELFYELELDAKPSKEKMGVIQDVLGEEQRFKALQKLQAERDALILKHIHFVYHPTKETCP
SCPACVDAKIEHLISSRFIRPSDRNQKNSLSDLNIDRINLVILGKDGLARELANEIRALCTNDDKYVIDG
KMYELSLRPIEGNVRLPVNSFQTPTFQPHGCLCLYNSKESLSYVVESIEKSRESTLGRRDNHLVHLPLTL
ILVNKRGDTSGETLHSLIQQGQQIASKLQCVFLDPASAGIGYGRNINEKQISQVLKGLLDSKRNLNLVSS
TASIKDLADVDLRIVMCLMCGDPFSADDVLSPVLQSQTCKSSHCGSSNSVLLELPIGLHKKRIELSVLSY
HSSFSIRKSRLVHGYIVFYSAKRKASLAMLRAFLCEVQDIIPIQLVALTDGAIDVLDNDLSREQLTEGEE
IAQEIDGRFTSIPCSQPQHKLELFHPFFKDVVEKKNIIEATHMYDNVAEACSTTEEVFNSPRAGSPLCNS
NLQDSEEDVEPPSYHLFREDATLPSLSKDHSKFSMELEGNDGLSFIMSNFESKLNNKVPPPVKPKPPVHF
DITKDLSYLDQGHREGQRKSMSSSPWMPQDGFDPSDYAEPMDAVVKPRNEEENIYSVPHDSTQGKIITIR
NINKAQSNGSGNGSDSEMDTSSLERGRKVSAVSKPVLYRTRCTRLGRFASYRTSFSVGSDDELGPIRKKE
EDQASQGYKGDNAVIPYETDEDPRRRNILRSLRRNTKKPKPKPRPSITKATWESNYFGVPLTTVVTPEKP
IPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGAMKSFFSELPD
PLVPYSMQIDLVEAHKINDREQKLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSICF
WPTLMRPDFSSMDALTATRSYQTIIELFIQQCPFFFYNRPISEPPGAAPGSPSAMAPTVPFLTSTPATSQ
PSPPQSPPPTPQSPMQPLLSSQLQAEHTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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