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Report for CCDS20189.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20189.1 Public Mus musculus 6 Vmn1r25 23 108 98 CCDS HistoryNCBI Gene:113865Re-query CCDS DB by CCDS ID:20189.1Re-query CCDS DB by GeneID:113865See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20189.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176572.2 ENSMUSP00000135860.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176572.2Link to Ensembl Protein Viewer:ENSMUSP00000135860.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176572Re-query CCDS DB by Protein ID:ENSMUSP00000135860
Original member Current member EBI ENSMUST00000228585.1 ENSMUSP00000154074.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228585.1Link to Ensembl Protein Viewer:ENSMUSP00000154074.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228585Re-query CCDS DB by Protein ID:ENSMUSP00000154074
Original member Current member NCBI NM_053238.2 NP_444468.2 Accepted alive Link to Nucleotide Sequence:NM_053238.2Link to Protein Sequence:NP_444468.2Re-query CCDS DB by Nucleotide ID:NM_053238Re-query CCDS DB by Protein ID:NP_444468Link to BLAST:NP_444468.2

Chromosomal Locations for CCDS 20189.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 57978394 57979302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGTCCTCATTAACGAATATCCTTTATTTCCAAGCTGGACTTGGAATTCTAGCCAATACTTTTCTCCTTT
GTTTCTATACTTTCACAATCCTATGTCATAGATCAAAGCCCATGGATCTGACCTCCTGCCAACTGACCCT
TGCTCATATATTGTTTTTGCTAGCTGGAGGGGATAATTGGCTTGCAGTCATACTTGAGTCACTGAACATT
GAGAATGACTTCAAGTGTAAGGCAATTTTTTATACAAATAGGGTCATGAGAGGGTTCTCTATTTGCATCA
CCTGCCTACTGAGTGTGTTCCAGGCTGTCACAATCAGTCCCCATACCTCATTGTTGGCAAAATTTAAGCA
TAAGCTAAAAACATACATCATCTATGCTGTTTTCTATATTTGGTTTTATAATTTCTTGGTCTGTAGTCAC
CTGTTAGTCTATGTTGGTGGTTTTAACAATGTGAGTGAAACCAACCAGATGAGAGTCACTGAATCCTGTT
CACTATTTCTCATGAACTACATCATCAGTGGATTGATTTTTACAGTGACAACTTTCAGAGATGTGTTTCT
TGTAGGAGTCATGCTGATCACAAATGCATATATAGTGATTATCTTGTTCAGACACCAGAGGCACTGCAAG
CATCTTCATAGCATCAGGCACCTGAGAGTGTCCCCTGAGAAAAGGGCCACCCAGACCATCCTACTACTTA
TGGTTTTCTTTGTGGTCATGTATTGGGTGGAAATCATCATCTCATCCACCTCACTCTTGTTATGGATGTA
TGACCCAGGCTTCCTGACTGTTCAGAAGCTCATAGTGACTGTCTATCCCACAATTACTCCTTTGGTACAA
ATCAGTTCTGATAAGAGAGTAATCAATGTGTTGAAAAACTTGCAATCAAAGTGCCAACAGATTTTCTAA

Translation (302 aa):
MSSLTNILYFQAGLGILANTFLLCFYTFTILCHRSKPMDLTSCQLTLAHILFLLAGGDNWLAVILESLNI
ENDFKCKAIFYTNRVMRGFSICITCLLSVFQAVTISPHTSLLAKFKHKLKTYIIYAVFYIWFYNFLVCSH
LLVYVGGFNNVSETNQMRVTESCSLFLMNYIISGLIFTVTTFRDVFLVGVMLITNAYIVIILFRHQRHCK
HLHSIRHLRVSPEKRATQTILLLMVFFVVMYWVEIIISSTSLLLWMYDPGFLTVQKLIVTVYPTITPLVQ
ISSDKRVINVLKNLQSKCQQIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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