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Report for CCDS19927.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19927.1 Public Mus musculus 6 St7 23 108 98 CCDS HistoryNCBI Gene:64213Re-query CCDS DB by CCDS ID:19927.1Re-query CCDS DB by GeneID:64213See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19927.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053148.13 ENSMUSP00000057326.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053148.13Link to Ensembl Protein Viewer:ENSMUSP00000057326.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000053148Re-query CCDS DB by Protein ID:ENSMUSP00000057326
Original member Current member NCBI NM_022332.3 NP_071727.2 Accepted alive Link to Nucleotide Sequence:NM_022332.3Link to Protein Sequence:NP_071727.2Re-query CCDS DB by Nucleotide ID:NM_022332Re-query CCDS DB by Protein ID:NP_071727Link to BLAST:NP_071727.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071727.2 534 Q99M96-8 534 100% 0 0

Chromosomal Locations for CCDS 19927.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 17749593 17749614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17819250 17819332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17834617 17834776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17844909 17844963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17846199 17846314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17848004 17848079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17850357 17850425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17852258 17852412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17854931 17855028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17886004 17886118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17904897 17904969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17906408 17906510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17921989 17922139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17930766 17930858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17934119 17934258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17942670 17942765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGTTTGGTACTGAATCTTCATTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTCTACGTGGCCCTGA
CAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAAGTATGGAAC
ATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCC
AATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGTATGGC
GAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTCT
GACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTT
CGCCCTGCAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTC
ATGAAGCCTTGGAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTG
GGAGATAAAATTGTTACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATT
GCTGAAGCAGAAAAACTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGC
TACAACATCATGGGTCCCAGTATGAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAG
AAGGCTGGCGATGTGTGCCCGGAGACTTGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATG
AAGGAGTTTCCCCTCCTAAGCATGTTCAATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAG
CTTATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCGGCGACAATATG
CTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCAGAGGCTGCGTCTCGGAGG
GGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTGGAATTTAATCCACACGTGC
CAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAAGAGAGGAGACAGTGA
AGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGAATCTCTTGCAT
TGTACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTATCCATACC
CAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAAGAA
GGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACA
CATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGCTTTCCTCAGCACTTTGTTTGCCCCCTTGAACT
TTGTTATGGAGAAAGTGGAAAGCATCCTCCCCTCCAGTTTGTGGCATCAGCTGACACGGATCTGA

Translation (534 aa):
MFGTESSLSMFLNTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVSVSHLRPLLGGVDNNSS
NNSNSSNGDSDSNRQSVSECKVWRNPLNLFRGAEYNRYTWVTGREPLTYYDMNLSAQDHQTFFTCDSDHL
RPADAIMQKAWRERNPQARISAAHEALEINEIRSRVEVPLIASSTIWEIKLLPKCATAYILLAEEEATTI
AEAEKLFKQALKAGDGCYRRSQQLQHHGSQYEAQHRRDTNVLVYIKRRLAMCARRLGRTREAVKMMRDLM
KEFPLLSMFNIHENLLEALLELQAYADVQAVLAKYDDISLPKSATICYTAALLKARAVSDKFSPEAASRR
GLSTAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGDSEAIAYAFFHLAHWKRVEGALNLLH
CTWEGTFRMIPYPLEKGHLFYPYPICTETADRELLPSFHEVSVYPKKELPFFILFTAGLCSFTAMLALLT
HQFPELMGVFAKAFLSTLFAPLNFVMEKVESILPSSLWHQLTRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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