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Report for CCDS19741.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19741.1 Public Mus musculus 5 Ccl26 23 108 98 CCDS HistoryNCBI Gene:541307Re-query CCDS DB by CCDS ID:19741.1Re-query CCDS DB by GeneID:541307See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19741.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094226.1 ENSMUSP00000091779.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094226.1Link to Ensembl Protein Viewer:ENSMUSP00000091779.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000094226Re-query CCDS DB by Protein ID:ENSMUSP00000091779
Original member Current member NCBI NM_001013412.2 NP_001013430.2 Accepted alive Link to Nucleotide Sequence:NM_001013412.2Link to Protein Sequence:NP_001013430.2Re-query CCDS DB by Nucleotide ID:NM_001013412Re-query CCDS DB by Protein ID:NP_001013430Link to BLAST:NP_001013430.2

Chromosomal Locations for CCDS 19741.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135560448 135560544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135563297 135563411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135563500 135563569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGTTCTTCGATTTGGGTCTCCTTGTTCTCCTGGCCATCTTCCTCAGTGTCCAGCTTGGTGTTGCCACAT
GTGGGAGCAGCATCGCTATGTCCTGCTGCCCTAATTTCAGCTACTATGTGATCCCATGGAGCTGGGTGTA
CAGCTATAAGTTCACCGACAAGAGCTGCACCAGTGACGGTGTGATATTCTTTACAAAAACAGGTAAGCAA
TTCTGTGTCCAGCCAGGGGCCAAATGGGTGCAGAGATTCATCTCTCTGGTGAACACCAGGAACCATTTGT
GA

Translation (93 aa):
MFFDLGLLVLLAIFLSVQLGVATCGSSIAMSCCPNFSYYVIPWSWVYSYKFTDKSCTSDGVIFFTKTGKQ
FCVQPGAKWVQRFISLVNTRNHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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