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Report for CCDS19537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19537.1 Public Mus musculus 5 Crybb1 23 108 98 CCDS HistoryNCBI Gene:12960Re-query CCDS DB by CCDS ID:19537.1Re-query CCDS DB by GeneID:12960See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031286.12 ENSMUSP00000031286.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031286.12Link to Ensembl Protein Viewer:ENSMUSP00000031286.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000031286Re-query CCDS DB by Protein ID:ENSMUSP00000031286
Original member Current member EBI ENSMUST00000112375.1 ENSMUSP00000107994.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112375.1Link to Ensembl Protein Viewer:ENSMUSP00000107994.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112375Re-query CCDS DB by Protein ID:ENSMUSP00000107994
Original member Current member NCBI NM_001312893.1 NP_001299822.1 Accepted alive Link to Nucleotide Sequence:NM_001312893.1Link to Protein Sequence:NP_001299822.1Re-query CCDS DB by Nucleotide ID:NM_001312893Re-query CCDS DB by Protein ID:NP_001299822Link to BLAST:NP_001299822.1
Original member Current member NCBI NM_001312894.1 NP_001299823.1 Accepted alive Link to Nucleotide Sequence:NM_001312894.1Link to Protein Sequence:NP_001299823.1Re-query CCDS DB by Nucleotide ID:NM_001312894Re-query CCDS DB by Protein ID:NP_001299823Link to BLAST:NP_001299823.1
Original member Current member NCBI NM_001312895.1 NP_001299824.1 Accepted alive Link to Nucleotide Sequence:NM_001312895.1Link to Protein Sequence:NP_001299824.1Re-query CCDS DB by Nucleotide ID:NM_001312895Re-query CCDS DB by Protein ID:NP_001299824Link to BLAST:NP_001299824.1
Original member Current member NCBI NM_023695.3 NP_076184.1 Accepted alive Link to Nucleotide Sequence:NM_023695.3Link to Protein Sequence:NP_076184.1Re-query CCDS DB by Nucleotide ID:NM_023695Re-query CCDS DB by Protein ID:NP_076184Link to BLAST:NP_076184.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001299822.1 250 Q9WVJ5 250 100% 0 0
NP_001299823.1 250 Q9WVJ5 250 100% 0 0
NP_001299824.1 250 Q9WVJ5 250 100% 0 0
NP_076184.1 250 Q9WVJ5 250 100% 0 0

Chromosomal Locations for CCDS 19537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 112257384 112257557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112259257 112259375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112263511 112263643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112267315 112267457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 112269317 112269500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGTCCCAGGCTGCCAAGGCTTCAGCCACCACAGCGGTGAACCCAGGGCCTGATGGCAAGGGAAAAGGGG
CCCCATCCACAGGGCCAGCCCCTGCCCCTGGCCCCACTCCTGTCCCAGCTTCTGTGCCCAGGCCCGCTGC
CAAAGTAGGGGACCTGCCTCCTGGGAGCTACAGGCTGATCGTCTTCGAGCAGGAAAACTTTCAGGGCCGC
CGGGTGGAATTCTCGGGGGAGTGCCTGAATCTGGGGGACCGTGGCTTCGACAGAGTGCGCAGCCTGATCG
TCGTCTCGGGACCCTGGGTGGCCTTTGAGCAATCTGCCTTCCGTGGAGAGATGTTTGTCCTGGAGAAGGG
CGAGTACCCACGCTGGGACACCTGGACCAGCAGTTACCGCAGTGACCGGCTCATGTCCTTCCGGCCCATC
AGGATGGATTCCCAGGAACATAAGATCTGCCTGTTCGAAGGGGCCAACTTCAAGGGCAACACCATGGAGA
TCCAAGAGGATGATGTGCCCAGCCTCTGGGTTTATGGCTTCTGTGACCGTGTGGGCAGCATAACCGTCTC
TGGTGGCACATGGGTCGGCTACCAGTACCCAGGTTACCGTGGCTACCAGTATCTGCTGGAGCCTGGCGAC
TTCCGGCACTGGAACGAGTGGGGCGCCTTCCAGCCGCAGATGCAGGCTGTGCGGCGCCTGCGGGACCGCC
AGTGGCACCAAGAGGGCTGCTTCCCGGTGCTGACAGCCGAGCCCCCCAAGTGA

Translation (250 aa):
MSQAAKASATTAVNPGPDGKGKGAPSTGPAPAPGPTPVPASVPRPAAKVGDLPPGSYRLIVFEQENFQGR
RVEFSGECLNLGDRGFDRVRSLIVVSGPWVAFEQSAFRGEMFVLEKGEYPRWDTWTSSYRSDRLMSFRPI
RMDSQEHKICLFEGANFKGNTMEIQEDDVPSLWVYGFCDRVGSITVSGGTWVGYQYPGYRGYQYLLEPGD
FRHWNEWGAFQPQMQAVRRLRDRQWHQEGCFPVLTAEPPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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