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Report for CCDS19484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19484.1 Public Mus musculus 5 Dmp1 23 108 98 CCDS HistoryNCBI Gene:13406Re-query CCDS DB by CCDS ID:19484.1Re-query CCDS DB by GeneID:13406See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066708.6 ENSMUSP00000068053.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066708.6Link to Ensembl Protein Viewer:ENSMUSP00000068053.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000066708Re-query CCDS DB by Protein ID:ENSMUSP00000068053
Original member Current member NCBI NM_001359013.1 NP_001345942.1 Accepted alive Link to Nucleotide Sequence:NM_001359013.1Link to Protein Sequence:NP_001345942.1Re-query CCDS DB by Nucleotide ID:NM_001359013Re-query CCDS DB by Protein ID:NP_001345942Link to BLAST:NP_001345942.1
Original member Current member NCBI NM_016779.2 NP_058059.2 Accepted alive Link to Nucleotide Sequence:NM_016779.2Link to Protein Sequence:NP_058059.2Re-query CCDS DB by Nucleotide ID:NM_016779Re-query CCDS DB by Protein ID:NP_058059Link to BLAST:NP_058059.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345942.1 503 O55188 503 100% 0 0
NP_058059.2 503 O55188 503 100% 0 0

Chromosomal Locations for CCDS 19484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 104207097 104207150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104207590 104207637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104209898 104209930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104210102 104210146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 104211640 104212971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1512 nt):
ATGAAGACTGTCATTCTCCTTGTGTTCCTTTGGGGGCTGTCCTGTGCTCTCCCAGTTGCCAGATACCACA
ATACTGAATCTGAAAGCTCTGAAGAGAGGACGGGTGATTTGGCTGGGTCACCACCACCACCCACGAACAG
TGAGTCATCAGAAGAAAGTCAAGCTAGCCCAGAGGGACAGGCAAATAGTGACCACACGGACAGCAGTGAA
TCTGGAGAGGAGCTGGGCTACGACAGAGGCCAGTACAGACCGGCTGGTGGACTCTCTAAGAGTACGGGGA
CCGGCGCCGATAAGGAGGATGATGAAGACGACAGTGGAGATGATACCTTTGGCGATGAGGACAATGATCT
AGGGCCCGAAGAAGGACAGTGGGGAGGACCCTCCAAACTGGACAGTGATGAGGACTCCACAGACACCACA
CAGTCCAGTGAAGACAGCACCTCTCAAGAAAACAGTGCCCAAGATACCCCCAGCGACAGCAAAGACCACG
ACAGTGAGGATGAGGCAGACAGCCGGCCTGAGGCAGGCGACTCCACTCAGGACAGTGAGAGTGAGGAACA
GCGGGTGGGAGGTGGCAGCGAGGGGGAGAGTAGCCACGGGGACGGTTCTGAGTTCGATGATGAAGGGATG
CAGAGCGACGACCCCGAGAGTACCAGGAGCGATCGAGGCCACGCCAGAATGAGCAGCGCTGGTATCAGGT
CGGAAGAATCTAAAGGGGACCACGAGCCCACGAGCACTCAGGATTCAGATGACAGCCAGTCTGTGGAATT
TTCAAGCAGGAAGTCCTTCAGAAGGTCCCACGTCTCTGAGGAAGACTACAGAGGTGAGCTTACTGACAGC
AACAGCAGGGAAACCCAGAGCGACTCCACGGAGGATACGGCCTCCAAGGAGGAAAGCAGGAGCGAGTCTC
AGGAGGACACAGCCGAGAGCCAGTCCCAGGAAGATAGCCCAGAGGGGCAAGACCCCAGCAGTGAGTCCAG
CGAAGAGGCTGGTGAGCCATCCCAGGAAAGCAGCAGCGAATCTCAGGAAGGGGTGACCAGCGAGTCCAGG
GGTGACAACCCAGATAACACAAGTCAGGCAGGAGACCAAGAAGACAGTGAGTCCAGTGAGGAGGACAGCC
TGAACACATTCTCCAGCTCAGAAAGCCAGTCCACCGAGGAGCAAGCTGACAGCGAGTCCAACGAGAGCCT
CAGCCTCTCCGAGGAGAGTCAGGAGTCGGCCCAGGATGGTGACAGCTCCAGCCAGGAAGGCCTGCAGTCC
CAGAGCGCATCCACTGAGAGCAGGAGCCAGGAGAGCCAGTCTGAGCAGGACAGCCGTTCTGAGGAAGACA
GTGACTCTCAGGACAGTAGCCGATCCAAAGAAGAGAGCAACTCCACAGGGAGCGCTTCCAGCAGCGAGGA
GGACATCCGTCCCAAGAACATGGAAGCTGACAGTAGGAAACTAATAGTTGATGCTTACCACAACAAACCC
ATCGGGGACCAAGATGACAATGACTGTCAGGACGGCTACTAG

Translation (503 aa):
MKTVILLVFLWGLSCALPVARYHNTESESSEERTGDLAGSPPPPTNSESSEESQASPEGQANSDHTDSSE
SGEELGYDRGQYRPAGGLSKSTGTGADKEDDEDDSGDDTFGDEDNDLGPEEGQWGGPSKLDSDEDSTDTT
QSSEDSTSQENSAQDTPSDSKDHDSEDEADSRPEAGDSTQDSESEEQRVGGGSEGESSHGDGSEFDDEGM
QSDDPESTRSDRGHARMSSAGIRSEESKGDHEPTSTQDSDDSQSVEFSSRKSFRRSHVSEEDYRGELTDS
NSRETQSDSTEDTASKEESRSESQEDTAESQSQEDSPEGQDPSSESSEEAGEPSQESSSESQEGVTSESR
GDNPDNTSQAGDQEDSESSEEDSLNTFSSSESQSTEEQADSESNESLSLSEESQESAQDGDSSSQEGLQS
QSASTESRSQESQSEQDSRSEEDSDSQDSSRSKEESNSTGSASSSEEDIRPKNMEADSRKLIVDAYHNKP
IGDQDDNDCQDGY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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