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Report for CCDS19240.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19240.2 Public Mus musculus 5 Tbc1d14 23 108 98 CCDS HistoryNCBI Gene:100855Re-query CCDS DB by CCDS ID:19240.2Re-query CCDS DB by GeneID:100855See the combined annotation on chromosome 5 in Sequence Viewer

Public Note for CCDS 19240.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 19240.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031094.14 ENSMUSP00000031094.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031094.14Link to Ensembl Protein Viewer:ENSMUSP00000031094.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031094Re-query CCDS DB by Protein ID:ENSMUSP00000031094
Original member Current member EBI ENSMUST00000140607.7 ENSMUSP00000121516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140607.7Link to Ensembl Protein Viewer:ENSMUSP00000121516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140607Re-query CCDS DB by Protein ID:ENSMUSP00000121516
Original member Current member EBI ENSMUST00000146430.7 ENSMUSP00000121816.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146430.7Link to Ensembl Protein Viewer:ENSMUSP00000121816.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146430Re-query CCDS DB by Protein ID:ENSMUSP00000121816
Original member Current member NCBI NM_133910.3 NP_598671.3 Accepted alive Link to Nucleotide Sequence:NM_133910.3Link to Protein Sequence:NP_598671.3Re-query CCDS DB by Nucleotide ID:NM_133910Re-query CCDS DB by Protein ID:NP_598671Link to BLAST:NP_598671.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598671.3 694 Q8CGA2 694 99.8559% 0 1

Chromosomal Locations for CCDS 19240.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36493049 36493114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36495018 36495276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36505025 36505134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36507578 36507706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36508360 36508431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36512454 36512548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36514039 36514119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36519273 36519379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36520444 36520561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36522927 36523009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36524930 36525048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36543177 36543297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36571296 36572020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2085 nt):
ATGACTGATGGAAACCTTTCCACCTCGATGAATGGTGTAGCATTGATGGGCATCCTAGATGGTCGGCAAG
GAGACTCCCTTCAGGACCTACAACACCTTAGTATCAAGGCGGCTCCCAGATCCCTTTCAGTGCCTGACTA
CGGACCTTCACTAAAACTTGGTGCTTTGGAAGATCGACACAGCCTTCAATCAGTGGACTCGGGCATTCCT
ACCCTGGAGATTGGCAACCCAGAGCCTGTTCCCTGCAGTGTGGTCCATGTGAAGAGAAAGCAGTCTGAGT
CAGAGATCGTCCCGGAGCGGGCCTTCCAGAGTGCATGCCCGCTGCCGTCGTGCACACCCTCAGCTCCCAC
CTGCAGCGAGCGGGAGCAGGTTGTGCGGAAGTCTTCCACATTTCCTAGGACAGGCTATGACTCAGTGAAA
CTCTACAGCCCCACCTCCAAAGCCTTGAGCCGAAGTGACAATGTCTCTGTCTGCAGTGTGTCTAGTCTTG
GCACAGAGCTGTCAACTACGTTGTCGGTCAGCAATGAGGACATCTTGGACCTCATGGTCACGAGCAATTC
CAGCGCTATTGTGACCCTGGAGAATGATGATGACCCACAGTTTACTGACGTCACCCTGAGCTCCATCAAT
GAAACCAGCGACTTACACCAGCAGGACTGTGTTGCTGAGACTGAGGAGGGGAGGAAATTGAAACTATTGC
ACCCATTCAGTCACTTCTTTACAAGGAATTTGCTTGCTAGAAAACAAAATGCAAGGCTTGATAGACAGAG
AGACTTGGGATGGAAGCTGTTTGGAAAAGTCCCACTCCGAGAGACTGCTCAGAAAGATTCAAAGAAGACC
CAGAAGGAATATGAAGACAAGGCTGGAAGACCGAGCAGGCCACCCTCTCCCAAGCAGAATGTGAGGAAGA
ACCTGGATTTTGAGCCACTGTCCACCACGGCGCTCATCCTCGAGGACAGACCTGCAAATCTCCCAGCCAA
GCCAGCTGAAGAAGCTCAAAAGCACAGACAGCAGTATGAAGAGATGGTGCTGCAGGCCAAGAAACGAGAG
CTTAAAGAAGCCCAGCGTCGGAGGAAGCAGCTGGAGGAAAGGTGCAAGGTTGAAGAGAGCATTGGGAACG
CTGTCCTCACCTGGAACAATGAGATCTTGCCTAACTGGGAAACCATGTGGTGCTCTAAGAAGGTTCGAGA
CTTGTGGTGGCAGGGAATCCCTCCGAGTGTAAGAGGCAAAGTTTGGAGCTTGGCCATTGGCAACGAGTTG
AACATCACTCACGAGCTCTTTGACATCTGTCTTGCTCGGGCCAAGGAGCGGTGGCGGTCCCTCAGCACTG
GAGGCTCAGAAGTGGAGAATGAAGATGCTGGGTTTTCAGCAGCAGACAGAGAGGCCAGTCTGGAGCTTAT
TAAACTGGACATTTCTAGAACATTTCCTAATCTCTGCATTTTCCAGCAAGGTGGTCCGTATCATGACATG
TTGCACAGTATTTTGGGCGCTTATACTTGTTACCGGCCGGATGTGGGTTATGTTCAGGGCATGTCCTTTA
TAGCTGCAGTGTTGATCTTGAACCTCGATACTGCAGATGCCTTTATTGCTTTTTCTAATCTTTTGAATAA
ACCCTGTCAAATGGCGTTTTTCCGAGTGGACCATGGCCTTATGTTGACTTACTTTGCTGCATTTGAGGTA
TTCTTTGAAGAAAACTTGCCGAAATTGTTTGCGCATTTCAAGAAAAACAACTTAACTGCAGATATCTACC
TAATCGATTGGATTTTCACCTTGTACAGTAAGTCCCTGCCCTTGGACTTGGCCTGCCGCATCTGGGACGT
ATTCTGTCGAGATGGAGAGGAATTTCTCTTCCGCACAGCTCTGGGCATCCTGAAGCTTTTTGAAGATATC
CTGACCAGGATGGACTTCATCCACAGTGCCCAGTTTCTGACCAGGCTGCCTGAGGACCTGCCCGCAGATG
AAGTGTTTGCAGCTATCTCCACAGTCCAGATGCAAAGCCGGAACAAGAAATGGGCACAGGTGCTGTCTGC
ACTGCAGAAAGACAGCCGGGAGATGGAGAAAGGAAGCCCATCCCTCAGACACTGA

Translation (694 aa):
MTDGNLSTSMNGVALMGILDGRQGDSLQDLQHLSIKAAPRSLSVPDYGPSLKLGALEDRHSLQSVDSGIP
TLEIGNPEPVPCSVVHVKRKQSESEIVPERAFQSACPLPSCTPSAPTCSEREQVVRKSSTFPRTGYDSVK
LYSPTSKALSRSDNVSVCSVSSLGTELSTTLSVSNEDILDLMVTSNSSAIVTLENDDDPQFTDVTLSSIN
ETSDLHQQDCVAETEEGRKLKLLHPFSHFFTRNLLARKQNARLDRQRDLGWKLFGKVPLRETAQKDSKKT
QKEYEDKAGRPSRPPSPKQNVRKNLDFEPLSTTALILEDRPANLPAKPAEEAQKHRQQYEEMVLQAKKRE
LKEAQRRRKQLEERCKVEESIGNAVLTWNNEILPNWETMWCSKKVRDLWWQGIPPSVRGKVWSLAIGNEL
NITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELIKLDISRTFPNLCIFQQGGPYHDM
LHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEV
FFEENLPKLFAHFKKNNLTADIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDI
LTRMDFIHSAQFLTRLPEDLPADEVFAAISTVQMQSRNKKWAQVLSALQKDSREMEKGSPSLRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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