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Report for CCDS19125.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19125.1 Public Mus musculus 5 Abcf2 23 108 98 CCDS HistoryNCBI Gene:27407Re-query CCDS DB by CCDS ID:19125.1Re-query CCDS DB by GeneID:27407See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19125.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030795.9 ENSMUSP00000030795.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030795.9Link to Ensembl Protein Viewer:ENSMUSP00000030795.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030795Re-query CCDS DB by Protein ID:ENSMUSP00000030795
Original member NCBI NM_001359205.1 NP_001346134.1 Updated not alive Link to Nucleotide Sequence:NM_001359205.1Link to Protein Sequence:NP_001346134.1Re-query CCDS DB by Nucleotide ID:NM_001359205Re-query CCDS DB by Protein ID:NP_001346134
Current member NCBI NM_001359205.2 NP_001346134.1 Accepted alive Link to Nucleotide Sequence:NM_001359205.2Link to Protein Sequence:NP_001346134.1Re-query CCDS DB by Nucleotide ID:NM_001359205Re-query CCDS DB by Protein ID:NP_001346134Link to BLAST:NP_001346134.1
Original member NCBI NM_013853.2 NP_038881.1 Updated not alive Link to Nucleotide Sequence:NM_013853.2Link to Protein Sequence:NP_038881.1Re-query CCDS DB by Nucleotide ID:NM_013853Re-query CCDS DB by Protein ID:NP_038881
Current member NCBI NM_013853.3 NP_038881.1 Accepted alive Link to Nucleotide Sequence:NM_013853.3Link to Protein Sequence:NP_038881.1Re-query CCDS DB by Nucleotide ID:NM_013853Re-query CCDS DB by Protein ID:NP_038881Link to BLAST:NP_038881.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346134.1 628 Q99LE6 628 100% 0 0
NP_038881.1 628 Q99LE6 628 100% 0 0

Chromosomal Locations for CCDS 19125.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 24565866 24566003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24566479 24566682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24567184 24567312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24567501 24567563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24568205 24568315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24568567 24568656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24568738 24568857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24569071 24569166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24571144 24571246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24572003 24572098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24573422 24573776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24574167 24574379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 24576519 24576687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1887 nt):
ATGCCTTCCGACCTGGCCAAGAAGAAGGCAGCCAAAAAGAAGGAGGCTGCCAAAGCCCGACAGCGACCCA
GAAAGGGACATGAAGAAAATGGAGATGCTGTCACAGAACCTCAGGTGGCAGAAGAGAAAATCGAGGAGGC
CAATGGCAGAGAGACCACAGGAGATGGAGAAGTAGATTTGCTGACCAAGGAGCTGGAGGACTTTGAGATG
AAGAAAGCTGCTGCTCGAGCTGTCACCGGTGTCCTGGCTTCTCACCCCAACAGTACTGATGTCCACATTA
TCAACCTCTCCCTTACCTTTCATGGTCAAGAGCTGCTCAGCGACACCAAACTGGAATTAAACTCAGGCCG
GCGCTATGGCCTCATTGGCTTAAATGGAATTGGAAAGTCCATGCTGCTCTCGGCTATTGGGAAACGTGAA
GTGCCCATCCCAGAGCACATCGACATCTACCATCTGACTCGTGAGATGCCTCCTAGCGAAAAAACACCCT
TGCAGTGTGTGATGGAGGTGGACACAGAGCGGGCCATGCTGGAGAGAGAGGCTGAGCGGTTAGCACATGA
GGATGCGGAGTGTGAAAAGCTCATGGAGCTCTATGAACGGCTGGAAGAGCTGGATGCTGACAAAGCTGAG
ATGAGGGCCTCAAGGATCTTACATGGATTGGGCTTCACACCTGCTATGCAGCGCAAGAAGCTGAAAGACT
TCAGTGGTGGCTGGCGGATGAGAGTTGCTCTTGCTAGAGCCCTCTTTATTCGGCCCTTCATGCTGCTTCT
GGACGAGCCTACCAACCACCTGGACCTCGATGCTTGTGTGTGGCTGGAAGAGGAACTTAAGACTTTCAAG
CGCATCCTGGTCCTGGTGTCCCATTCCCAGGACTTCCTGAATGGGGTCTGTACCAATATCATCCATATGC
ACAACAAGAAACTCAAGTATTACACGGGTAATTATGATCAGTATGTGAAGACACGGCTGGAGTTGGAAGA
GAACCAGATGAAGAGGTTTCACTGGGAGCAGGACCAGATCGCACACATGAAGAACTACATTGCCAGGTTT
GGCCATGGCAGTGCCAAGCTGGCCCGGCAGGCCCAAAGCAAAGAGAAAACACTACAGAAAATGATGGCAT
CCGGACTGACAGAAAGGGTTGTGAGTGACAAGACGCTGTCATTTTATTTCCCACCGTGCGGTAAGATCCC
ACCACCTGTCATTATGGTGCAGAACGTGAGCTTCAAATATACGAAAGACGGGCCTTGCATCTACAATAAT
CTAGAATTTGGTATTGATCTTGACACACGAGTGGCTCTGGTAGGACCCAATGGAGCAGGGAAGTCCACTC
TGCTGAAGCTGCTAACCGGAGAGCTTCTGCCTACAGATGGAATGATCCGGAAGCATTCTCATGTCAAGAT
AGGGCGTTACCATCAGCACTTACAGGAGCAGCTGGACCTTGACCTTTCACCATTGGAATACATGATGAAG
TGCTATCCAGAGATCAAGGAGAAGGAGGAGATGAGGAAGATCATTGGGAGATACGGCCTCACTGGGAAAC
AGCAGGTGAGCCCAATCCGGAACCTGTCGGATGGGCAGAAGTGCCGAGTGTGCCTGGCCTGGCTGGCCTG
GCAGAACCCTCACATGCTCTTTCTGGACGAGCCTACCAATCACCTGGACATCGAGACCATTGATGCTCTG
GCAGATGCCATCAATGAGTTTGAGGGTGGAATGATGCTAGTCAGCCATGACTTCAGACTCATCCAGCAGG
TTGCACAGGAGATTTGGGTCTGTGAGAAACAGACAATCACCAAGTGGCCTGGAGACATCCTGGCCTACAA
GGAGCACCTCAAGTCCAAGCTGGTAGATGAGGAGCCCCAGCTCACCAAGAGGACCCACAATGTGTGA

Translation (628 aa):
MPSDLAKKKAAKKKEAAKARQRPRKGHEENGDAVTEPQVAEEKIEEANGRETTGDGEVDLLTKELEDFEM
KKAAARAVTGVLASHPNSTDVHIINLSLTFHGQELLSDTKLELNSGRRYGLIGLNGIGKSMLLSAIGKRE
VPIPEHIDIYHLTREMPPSEKTPLQCVMEVDTERAMLEREAERLAHEDAECEKLMELYERLEELDADKAE
MRASRILHGLGFTPAMQRKKLKDFSGGWRMRVALARALFIRPFMLLLDEPTNHLDLDACVWLEEELKTFK
RILVLVSHSQDFLNGVCTNIIHMHNKKLKYYTGNYDQYVKTRLELEENQMKRFHWEQDQIAHMKNYIARF
GHGSAKLARQAQSKEKTLQKMMASGLTERVVSDKTLSFYFPPCGKIPPPVIMVQNVSFKYTKDGPCIYNN
LEFGIDLDTRVALVGPNGAGKSTLLKLLTGELLPTDGMIRKHSHVKIGRYHQHLQEQLDLDLSPLEYMMK
CYPEIKEKEEMRKIIGRYGLTGKQQVSPIRNLSDGQKCRVCLAWLAWQNPHMLFLDEPTNHLDIETIDAL
ADAINEFEGGMMLVSHDFRLIQQVAQEIWVCEKQTITKWPGDILAYKEHLKSKLVDEEPQLTKRTHNV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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