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Report for CCDS19110.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19110.1 Public Mus musculus 5 Orc5 23 108 98 CCDS HistoryNCBI Gene:26429Re-query CCDS DB by CCDS ID:19110.1Re-query CCDS DB by GeneID:26429See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19110.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030872.11 ENSMUSP00000030872.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030872.11Link to Ensembl Protein Viewer:ENSMUSP00000030872.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030872Re-query CCDS DB by Protein ID:ENSMUSP00000030872
Original member NCBI NM_011959.3 NP_036089.1 Updated not alive Link to Nucleotide Sequence:NM_011959.3Link to Protein Sequence:NP_036089.1Re-query CCDS DB by Nucleotide ID:NM_011959Re-query CCDS DB by Protein ID:NP_036089
Current member NCBI NM_011959.4 NP_036089.1 Accepted alive Link to Nucleotide Sequence:NM_011959.4Link to Protein Sequence:NP_036089.1Re-query CCDS DB by Nucleotide ID:NM_011959Re-query CCDS DB by Protein ID:NP_036089Link to BLAST:NP_036089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036089.1 435 Q9WUV0 435 100% 0 0

Chromosomal Locations for CCDS 19110.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 22487172 22487217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22499976 22500088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22516704 22516814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22522391 22522438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22523516 22523628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22524816 22524868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22526363 22526453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22526535 22526583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22529155 22529285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22533763 22533874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22537522 22537596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22546398 22546598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22547924 22548016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 22550192 22550263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGTCTCACTTGGAGAGCATGGTCCTCTGTCGAGAGGCCCAAGTGTCCACTTTGCAGTCCCTGTTTGGAG
AGAGACATCATTTCAGCTTTCCGTCCATCTTTATTTATGGACACACTGCCAGTGGGAAGACCTATGTAAC
ACAAACATTGTTGAAAACTTTAGAGCTGCCGCATGCCTTTGTGAATTGTGTTGAATGTTTTACTTCGAGG
CTACTTTTGGAACAAATTTTAAACAAGCTGAGTCATCTTAATTCTTCAGATGCAGGGTGTTCTACAGAAA
TGACCTGTGAAACATTTAATGACTTTGTTCAGTTATTTAAGCAAGTGACCAGTGCTGAACATCTCAAGGA
CCAGACTGTGTATATTGTTCTGGATAAAGCTGAGTATCTAAGAGACATGGAAGCAAATCTTTTGCCTGGG
CTCCTTAGGCTGCAAGAATTGACTGACAGAAATGTGACTGTTATCTTTCTCAGTGAGATTATTTGGGAAA
AATTTCGTCCAAATACTGGATGCTTTGAGCCATTTGTCTTATATTTCCCTGACTATAGCATAGGAAACCT
TCAAAAGATCCTGTCCCATGATCATCCTCCAGAGTATTCAGCGGATTTTTACGCTGCCTACATTAACATT
CTCCTTGGAGTTTTCTACACTGTCTGTCGGGATCTGAAAGAACTCAGACACCTGGCAGTGCTTAATTTCC
CCAAATACTGTGAACCTGTAGTTAAAGGAGAAGCAGGTGAACGTGATACTCGCAAACTGTGGAGAAATAT
TGAACCTCACCTGAAGAAGGCAATGCAGACTGTGTATCTCAGGGAGATCTCAAGTTCCCAGTGGGAAAAG
TTACAGAAAGATAACACAGACCCAGGACAACTGAAAGGTCTCTCGGCGTACACCCACATGGAACTTCCAT
ATTACTCCAAGTTTATTCTTATTGCTGCATACCTTGCCTCTTATAACCCAGCGAGAACTGATAAGAGGTT
CTTCCTTAAGCATCATGGGAAAATCAAGAAGACTAACTTTCTAAAGAAGCATGAGAAGACAAGCAATCAT
CTTCTTGGACCAAAGCCCTTTCCACTGGACAGATTATTAGCAATATTGTATAGTATAGTGGACAGCAGAG
TGGCTCCAACAGCAAATATCTTCTCCCAGATTACCTCCCTAGTGACTCTACAGCTGTTAACCATAGTTGG
TCATGAAGATCAACTTAATGGGCCAAAATACAAATGCACAGTTTCTCTAGATTTCATCAGAGCTATTGCA
CGGATGGTGAACTTTGACATAATAAAATACTTGTATGATTTCTTGTGA

Translation (435 aa):
MSHLESMVLCREAQVSTLQSLFGERHHFSFPSIFIYGHTASGKTYVTQTLLKTLELPHAFVNCVECFTSR
LLLEQILNKLSHLNSSDAGCSTEMTCETFNDFVQLFKQVTSAEHLKDQTVYIVLDKAEYLRDMEANLLPG
LLRLQELTDRNVTVIFLSEIIWEKFRPNTGCFEPFVLYFPDYSIGNLQKILSHDHPPEYSADFYAAYINI
LLGVFYTVCRDLKELRHLAVLNFPKYCEPVVKGEAGERDTRKLWRNIEPHLKKAMQTVYLREISSSQWEK
LQKDNTDPGQLKGLSAYTHMELPYYSKFILIAAYLASYNPARTDKRFFLKHHGKIKKTNFLKKHEKTSNH
LLGPKPFPLDRLLAILYSIVDSRVAPTANIFSQITSLVTLQLLTIVGHEDQLNGPKYKCTVSLDFIRAIA
RMVNFDIIKYLYDFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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