NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, June 4, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS18736.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18736.1 Public Mus musculus 4 Ppp1r8 23 108 98 CCDS HistoryNCBI Gene:100336Re-query CCDS DB by CCDS ID:18736.1Re-query CCDS DB by GeneID:100336See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18736.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030702.13 ENSMUSP00000030702.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030702.13Link to Ensembl Protein Viewer:ENSMUSP00000030702.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030702Re-query CCDS DB by Protein ID:ENSMUSP00000030702
Original member Current member NCBI NM_146154.3 NP_666266.1 Accepted alive Link to Nucleotide Sequence:NM_146154.3Link to Protein Sequence:NP_666266.1Re-query CCDS DB by Nucleotide ID:NM_146154Re-query CCDS DB by Protein ID:NP_666266Link to BLAST:NP_666266.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666266.1 351 Q8R3G1 351 100% 0 0

Chromosomal Locations for CCDS 18736.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132827853 132828206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132829373 132829437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132830625 132830769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132832897 132833117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132834637 132834790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132840644 132840704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132843057 132843112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1056 nt):
ATGGCGGCAGCCGTGAACTCCGGCTCCAGCCTCCCGCTGTTCGACTGCCCGACTTGGGCAGGTAAACCAC
CACCTGGCTTACATCTGGATGTGGTGAAAGGAGACAAGCTAATTGAGAAGCTGATTATTGATGAGAAAAA
GTATTACTTATTTGGGAGGAACCCCGATCTGTGTGACTTCACTATCGACCACCAGTCATGCTCTCGAGTC
CACGCAGCGCTGGTGTACCACAAACACCTGAAGAGAGTTTTCTTGATAGACCTCAACAGCACACATGGCA
CTTTCTTGGGTCACATTCGGCTGGAACCTCACAAGCCTCAACAGATTCCCATCGATTCTACGGTCTCATT
TGGCGCGTCCACGAGGGCATACACTCTGCGAGAGAAGCCTCAGACATTGCCATCGGCTGTGAAAGGAGAT
GAGAAGATGGGCGGAGAGGATGATGAACTCAAGGGCTTGTTGGGACTTCCCGAAGAGGAGACCGAGCTGG
ATAACCTGACAGAGTTCAACACTGCCCACAACAAGCGGATTTCAACCCTCACTATTGAGGAGGGGAACCT
GGACATCCAGAGACCAAAGAGGAAGAGGAAGAACTCAAGGGTGACCTTCAGTGAGGATGACGAGATCATC
AACCCAGAGGACGTGGATCCGTCTGTTGGTCGGTTCCGGAACATGGTGCAGACAGCAGTGGTTCCAGTCA
AGAAGAAGCGGATGGAGGGCTCTGGCTCTCTGGGCCTGGAGGAGTCGGGGAGCAGGCGCATGCAGAACTT
TGCCTTCAGTGGAGGACTATATGGGGGCCTGCCCCCCACACACAGTGAAACGGGCTCCCAGCCGCATGGC
ATTCATGGGACAGCGCTCATTGGTGGCTTGCCCATGCCATACCCGAACCTCGCCCCTGATGTGGACTTGA
CTCCTGTTGTGCCATCAGCAGTGGCCATAAATCCCACACCAAACCCTGCAGTCTATAACCCTGAGGCTGT
GAATGAACCCAAGAAGAAGAAATACGCGAAGGAGGCTTGGCCGGGCAAGAAGCCCACACCTTCCTTACTG
ATTTGA

Translation (351 aa):
MAAAVNSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV
HAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQTLPSAVKGD
EKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEII
NPEDVDPSVGRFRNMVQTAVVPVKKKRMEGSGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSETGSQPHG
IHGTALIGGLPMPYPNLAPDVDLTPVVPSAVAINPTPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLL
I


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH