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Report for CCDS18663.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18663.1 Public Mus musculus 4 Zmym1 23 108 98 CCDS HistoryNCBI Gene:68310Re-query CCDS DB by CCDS ID:18663.1Re-query CCDS DB by GeneID:68310See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18663.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055013.9 ENSMUSP00000050669.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055013.9Link to Ensembl Protein Viewer:ENSMUSP00000050669.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055013Re-query CCDS DB by Protein ID:ENSMUSP00000050669
Original member Current member EBI ENSMUST00000106102.8 ENSMUSP00000101708.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106102.8Link to Ensembl Protein Viewer:ENSMUSP00000101708.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106102Re-query CCDS DB by Protein ID:ENSMUSP00000101708
Original member Current member NCBI NM_026670.5 NP_080946.3 Accepted alive Link to Nucleotide Sequence:NM_026670.5Link to Protein Sequence:NP_080946.3Re-query CCDS DB by Nucleotide ID:NM_026670Re-query CCDS DB by Protein ID:NP_080946Link to BLAST:NP_080946.3

Chromosomal Locations for CCDS 18663.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127047642 127049906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127050564 127050601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127050744 127050872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127051275 127051425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127054208 127054382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127058793 127058986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2952 nt):
ATGCTTCCTGCAGTTCCAGGCACAGCTGTTCGACTCTCCTGTGCCAAATGTAAAAGAGTTTTTCAGGAGG
GACAGACAGCTTTTCAGAGGAAAGGGTCTGCTGAGCTTTTCTGCTCAAGACTATGCATTGATGGGTACCC
GTCACCTGCTGTGTCTCCAGCTCCTCTCAAAAGGATGTGCTTAAATTGCTCAAGAGACATTTTAAGTCTA
AAGGATATGAAGAGTGTCCAGTTGGAGGATAGTAGTTGTGACAAAAACTTTTGTAGCCAATCTTGTCTTA
CATCATATGAAGAAAAAAGAAAACCAGGTGTTACCATATATACTGATAGCAGTTTGCCCAAGTGCAGCAT
GTGTCAGAAGACATCTACTAAACCGCCCAGAATACTTAGATCTTCCCCGTGCAAATCACTGCAGCTGTCA
GATGAGATGATTGCGATTACTAACGACTTGGGGAACGTAGAGGTTTACTGCTCTGCTTGTTCTTCTTCAT
ACAACAGTGCTGTGATGGAGTCTCCTTCAGTTAATGTATCCATGGTGCACAGTTCTTCAAAAGAGAATCT
CTGTCCAAAGAAATATCCAGTTATAAGCAATATAATGTCGTTAGTAAATAATCATGTTGACCTGGTCGTG
AACACTGATCTCTTACAAGGTACACTTTCTTCTCTACCGACAGATGTCATCATGAGCAACTCAGCCAGTG
AGTCCAGCAGTGGTGTTGGTAATAGTGCGGACCAGCCAGGCCTCCTCCCACCTTGCTCGGTGCTCTGTGA
GGACACAGCTGCTCCCGGTGAGGGAGTAGAGAACAACAGTGAGAAATCCATGGAAGGAAATGATAGGCTG
TGTCTCTCAAAGTCCACATTAACAGAACAGAACATTAAGACAGAGCCTCCGGGAGAGCCCTGGAGCCCAG
CTCTCCAGCATCTGCATCCCAGCCCTGCAGACAATATCGCATTCTGCTATTCTTGCTACTTGTTCTTCCA
GAAAAAATTTAGCTGTCGGAGAGAAGCTTTTGCAACCCAAGGAACTGCTGACTGGGAGAAAATGCTGGGA
AATTTCAGAAAGCATGAAGAAAGTGACGTGCACTTAAAGTCACTGCAATTTTGGAGGCAATACCAGTTTC
TCGATGCTATTCCGTGTGACAATTCATCTGTTTATTCAAAACAGATTGAAGGAAATAAAAAGTACCTAAG
GCTCATCATTGAGAACATTTTATTTCTTGGAAAACAGTGCTTGCTGTTAAAAGGAAATGACCAGTCTGTT
TCACCCATGAATAAAGGCAGTTTTTTGGAATTGCTAGAACTTAGAGCAAGAGATAGAGGAGAGGTATTTC
AGCTCATGAGTTCCCACGTGGACTTCTATAGCAGCACGCTTGTCCAGGAGGAGATTATTGAAATGATAAA
GGATGAAATGTTGCAAGACATCGTGAGTGAGATCAACGCCTCCTCAGCCTTTTCAATAATCTGCGAGGAG
ATAGCTGGTAGTGCCGCTGAGAGACAGCTTTCCGTGTGTGTGAGGTACCCACAAAAGACGCCAAGTGCTG
TCTTGGTTAAGGAAAGGTTCCTGGGGTTTGTGACTGCCGAGGAGGTGACTGGGGTCCACGTGCATGGGCG
GATCAAAGCTTACCTGCAGCAGGTTGGAGTTGATTTTAATAAAATATGTGGCCAAGCCTATGATAGTGCC
ACAAATTTTACGGTAAAATTGAATGAAGTTGTAGCAGAATTCAAGAAGGAAGAGCCAAGAGCTCTCTATG
TGCATTGTCACGCCCATTTTTTGGAGTTAGCGGTGATTAGCTTCTGTAAGGAGGTGAAGGAGCTCCGCGA
GGCACTACACACTCTCTGCTCTTTGTTCAACACAGTTCATGTGTCTGAAGAAATGTTGGCAAGTTTGCAA
ACCATGTGTAAGCTAAGTCTAAATAAAACTTGTAAGAAACACACGTCACAGTCGTGTTGGCCAGCCCACG
ACCATTTGCTGCTGGCCGTGACGGACTGCCTTCCGGAGGTCGTTGAGGTGCTGGCGTCAGTGTCACGCCG
GTGCGCAGGCACAGCTGTGGCTGCCGAGCTGGAGGACCTGTTGGCCATGGTTACCAAGTTTGAATTTATA
TTTTGTTTGAAATTTCTTTATCGAGTACTCAGTATCACAGGGATTCTTTCTAGAGAGTTTCAAAGTGAAA
CTGTTGACATCTTTTCTTTGTTTTCAAAAATAGAAGCAATTTTGGAATGTTTATCTTCTGAAAGGAATGA
TACATACTTTAAAAATATCTGGGATGGAGCAGATGAAATATGTAAAAAGATAACCAGTAAGGGTTTTGAT
GTTGAGAAACCCTCTTTTCAAAAAAGAAGAAAAGTTCAAAGAACAGTAGATCCTGGCAACTCAGAGCATA
TGTTTTTTCCTACTTCAGCAGATGAACAATATAAATTTAATATTTACTACCAAGGTCTGGACACGGTATT
AAAACATTTAAAGTTATATTTTTCAGAGTTTGACTATTGTAAAATGAAACAAATTTCAGAGCTGTTACTT
AAGTGGAATGAGCCATTAAATGAAGCAACAGCCAAGCACATCCAGGAATTCTATAAGCTTGATGCAGACA
TCATTCCCGAGCTCCGATTTTACCGGCAGTATGCAGGTTTCAACTTCATCGCAGAGGATGGGTCCTTAAG
CTTCATTGACCTAGGCTCTTTGTTTATTCAGCATGCTCTCCACAATAATATTCCTTGTATCACGAAGCTG
TTGCATATTGCTTTATCTTGGCCAATTACTTCAGCAAATAATGAGAAGTCATTTTCCACGCTGTCTCATC
TTAAAACATACTTACTTCGTACCATGGGACAAGAGAAACTTAGTAGCCTGGCTCTGATAGCTGTTGAGCA
GGAACTGGTAAATAAACTGATGGAACCTGAAAGACTGGGGGGAATTGTCGAAAAGTTCATTAGTCAAATG
AAAGATACGTGA

Translation (983 aa):
MLPAVPGTAVRLSCAKCKRVFQEGQTAFQRKGSAELFCSRLCIDGYPSPAVSPAPLKRMCLNCSRDILSL
KDMKSVQLEDSSCDKNFCSQSCLTSYEEKRKPGVTIYTDSSLPKCSMCQKTSTKPPRILRSSPCKSLQLS
DEMIAITNDLGNVEVYCSACSSSYNSAVMESPSVNVSMVHSSSKENLCPKKYPVISNIMSLVNNHVDLVV
NTDLLQGTLSSLPTDVIMSNSASESSSGVGNSADQPGLLPPCSVLCEDTAAPGEGVENNSEKSMEGNDRL
CLSKSTLTEQNIKTEPPGEPWSPALQHLHPSPADNIAFCYSCYLFFQKKFSCRREAFATQGTADWEKMLG
NFRKHEESDVHLKSLQFWRQYQFLDAIPCDNSSVYSKQIEGNKKYLRLIIENILFLGKQCLLLKGNDQSV
SPMNKGSFLELLELRARDRGEVFQLMSSHVDFYSSTLVQEEIIEMIKDEMLQDIVSEINASSAFSIICEE
IAGSAAERQLSVCVRYPQKTPSAVLVKERFLGFVTAEEVTGVHVHGRIKAYLQQVGVDFNKICGQAYDSA
TNFTVKLNEVVAEFKKEEPRALYVHCHAHFLELAVISFCKEVKELREALHTLCSLFNTVHVSEEMLASLQ
TMCKLSLNKTCKKHTSQSCWPAHDHLLLAVTDCLPEVVEVLASVSRRCAGTAVAAELEDLLAMVTKFEFI
FCLKFLYRVLSITGILSREFQSETVDIFSLFSKIEAILECLSSERNDTYFKNIWDGADEICKKITSKGFD
VEKPSFQKRRKVQRTVDPGNSEHMFFPTSADEQYKFNIYYQGLDTVLKHLKLYFSEFDYCKMKQISELLL
KWNEPLNEATAKHIQEFYKLDADIIPELRFYRQYAGFNFIAEDGSLSFIDLGSLFIQHALHNNIPCITKL
LHIALSWPITSANNEKSFSTLSHLKTYLLRTMGQEKLSSLALIAVEQELVNKLMEPERLGGIVEKFISQM
KDT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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