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Report for CCDS18544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18544.1 Public Mus musculus 4 St3gal3 23 108 98 CCDS HistoryNCBI Gene:20441Re-query CCDS DB by CCDS ID:18544.1Re-query CCDS DB by GeneID:20441See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030263.8 ENSMUSP00000030263.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030263.8Link to Ensembl Protein Viewer:ENSMUSP00000030263.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000030263Re-query CCDS DB by Protein ID:ENSMUSP00000030263
Original member Current member EBI ENSMUST00000106410.7 ENSMUSP00000102018.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106410.7Link to Ensembl Protein Viewer:ENSMUSP00000102018.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106410Re-query CCDS DB by Protein ID:ENSMUSP00000102018
Original member NCBI NM_001161774.2 NP_001155246.1 Updated not alive Link to Nucleotide Sequence:NM_001161774.2Link to Protein Sequence:NP_001155246.1Re-query CCDS DB by Nucleotide ID:NM_001161774Re-query CCDS DB by Protein ID:NP_001155246
Current member NCBI NM_001161774.3 NP_001155246.1 Accepted alive Link to Nucleotide Sequence:NM_001161774.3Link to Protein Sequence:NP_001155246.1Re-query CCDS DB by Nucleotide ID:NM_001161774Re-query CCDS DB by Protein ID:NP_001155246Link to BLAST:NP_001155246.1
Original member NCBI NM_001285520.1 NP_001272449.1 Updated not alive Link to Nucleotide Sequence:NM_001285520.1Link to Protein Sequence:NP_001272449.1Re-query CCDS DB by Nucleotide ID:NM_001285520Re-query CCDS DB by Protein ID:NP_001272449
Current member NCBI NM_001285520.2 NP_001272449.1 Accepted alive Link to Nucleotide Sequence:NM_001285520.2Link to Protein Sequence:NP_001272449.1Re-query CCDS DB by Nucleotide ID:NM_001285520Re-query CCDS DB by Protein ID:NP_001272449Link to BLAST:NP_001272449.1
Original member NCBI NM_009176.5 NP_033202.3 Updated not alive Link to Nucleotide Sequence:NM_009176.5Link to Protein Sequence:NP_033202.3Re-query CCDS DB by Nucleotide ID:NM_009176Re-query CCDS DB by Protein ID:NP_033202
Current member NCBI NM_009176.6 NP_033202.3 Accepted alive Link to Nucleotide Sequence:NM_009176.6Link to Protein Sequence:NP_033202.3Re-query CCDS DB by Nucleotide ID:NM_009176Re-query CCDS DB by Protein ID:NP_033202Link to BLAST:NP_033202.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155246.1 374 P97325 374 100% 0 0
NP_001272449.1 374 P97325 374 100% 0 0
NP_033202.3 374 P97325 374 100% 0 0

Chromosomal Locations for CCDS 18544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117933047 117933136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117940010 117940156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117940354 117940500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117958428 117958614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117959075 117959170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117959998 117960061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117964330 117964424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118014705 118014797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118031840 118031882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118054650 118054697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118107549 118107663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGGGACTCTTGGTATTTGTGCGCAATCTGCTGCTAGCCCTCTGCCTCTTCCTGGTCCTGGGATTTTTGT
ATTATTCTGCCTGGAAGCTACACTTACTCCAATGGGAAGACTCCAATTCATTGCTTCTTTCCCTTGACTC
CGCTGGACAAACCCTAGGCACAGAGTATGATAGGCTGGGCTTCCTCCTGAAGCTGGACTCTAAACTGCCT
GCCGAGCTAGCCACCAAGTACGCAAACTTTTCCGAGGGAGCTTGCAAACCCGGCTACGCTTCAGCCATGA
TGACTGCCATCTTCCCCAGGTTCTCCAAGCCAGCACCCATGTTCCTGGATGACTCCTTTCGCAAGTGGGC
TAGGATCCGGGAGTTTGTGCCACCTTTTGGGATCAAAGGTCAAGACAATCTGATCAAAGCCATCTTGTCA
GTCACCAAAGAATACCGCCTGACCCCTGCCTTGGACAGCCTCCACTGCCGCCGCTGCATCATTGTAGGCA
ATGGAGGGGTCCTCGCCAACAAGTCTCTGGGGTCACGGATTGACGACTATGACATTGTGATCAGACTGAA
CTCAGCACCTGTGAAGGGCTTTGAGAGGGACGTGGGCAGCAAGACCACCCTACGCATCACCTACCCTGAG
GGCGCCATGCAGCGACCTGAGCAATATGAACGAGACTCTCTCTTTGTCCTCGCTGGCTTCAAGTGGCAGG
ACTTCAAGTGGCTGAAGTACATCGTCTACAAGGAGAGAGTGAGTGCATCTGATGGCTTCTGGAAGTCCGT
GGCCACCCGAGTGCCCAAGGAGCCCCCTGAGATCCGCATCCTCAACCCATACTTCATCCAGGAGGCTGCC
TTCACTCTCATTGGACTGCCCTTCAACAACGGCCTCATGGGCAGAGGGAACATCCCAACCCTTGGCAGTG
TGGCAGTGACCATGGCACTACACGGCTGTGATGAAGTGGCAGTCGCGGGCTTTGGCTATGACATGAACAC
ACCCAATGCACCCCTGCACTACTATGAAACTGTGCGCATGGCAGCCATCAAAGAGTCCTGGACACACAAC
ATCCAGCGAGAGAAAGAGTTTCTGCGGAAGCTAGTGAAGGCACGTGTCATCACTGACTTAAGCAGCGGTA
TCTGA

Translation (374 aa):
MGLLVFVRNLLLALCLFLVLGFLYYSAWKLHLLQWEDSNSLLLSLDSAGQTLGTEYDRLGFLLKLDSKLP
AELATKYANFSEGACKPGYASAMMTAIFPRFSKPAPMFLDDSFRKWARIREFVPPFGIKGQDNLIKAILS
VTKEYRLTPALDSLHCRRCIIVGNGGVLANKSLGSRIDDYDIVIRLNSAPVKGFERDVGSKTTLRITYPE
GAMQRPEQYERDSLFVLAGFKWQDFKWLKYIVYKERVSASDGFWKSVATRVPKEPPEIRILNPYFIQEAA
FTLIGLPFNNGLMGRGNIPTLGSVAVTMALHGCDEVAVAGFGYDMNTPNAPLHYYETVRMAAIKESWTHN
IQREKEFLRKLVKARVITDLSSGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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