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Report for CCDS18212.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18212.1 Public Mus musculus 4 Lpar1 23 108 98 CCDS HistoryNCBI Gene:14745Re-query CCDS DB by CCDS ID:18212.1Re-query CCDS DB by GeneID:14745See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18212.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055018.10 ENSMUSP00000052581.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055018.10Link to Ensembl Protein Viewer:ENSMUSP00000052581.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000055018Re-query CCDS DB by Protein ID:ENSMUSP00000052581
Original member Current member EBI ENSMUST00000107571.7 ENSMUSP00000103197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107571.7Link to Ensembl Protein Viewer:ENSMUSP00000103197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107571Re-query CCDS DB by Protein ID:ENSMUSP00000103197
Original member Current member EBI ENSMUST00000107574.7 ENSMUSP00000103200.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107574.7Link to Ensembl Protein Viewer:ENSMUSP00000103200.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107574Re-query CCDS DB by Protein ID:ENSMUSP00000103200
Original member Current member EBI ENSMUST00000107575.8 ENSMUSP00000103201.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107575.8Link to Ensembl Protein Viewer:ENSMUSP00000103201.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107575Re-query CCDS DB by Protein ID:ENSMUSP00000103201
Original member Current member NCBI NM_010336.2 NP_034466.2 Accepted alive Link to Nucleotide Sequence:NM_010336.2Link to Protein Sequence:NP_034466.2Re-query CCDS DB by Nucleotide ID:NM_010336Re-query CCDS DB by Protein ID:NP_034466Link to BLAST:NP_034466.2
Original member NCBI NM_172989.1 NP_766577.1 Updated not alive Link to Nucleotide Sequence:NM_172989.1Link to Protein Sequence:NP_766577.1Re-query CCDS DB by Nucleotide ID:NM_172989Re-query CCDS DB by Protein ID:NP_766577
Current member NCBI NM_172989.2 NP_766577.1 Accepted alive Link to Nucleotide Sequence:NM_172989.2Link to Protein Sequence:NP_766577.1Re-query CCDS DB by Nucleotide ID:NM_172989Re-query CCDS DB by Protein ID:NP_766577Link to BLAST:NP_766577.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034466.2 364 P61793 364 100% 0 0
NP_766577.1 364 P61793 364 100% 0 0

Chromosomal Locations for CCDS 18212.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 58437333 58437634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58486477 58487224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 58504622 58504666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGCAGCTGCCTCTACTTCCAGCCCTGTAATTTCACAGCCCCAGTTCACAGCCATGAACGAACAACAGT
GCTTCTACAATGAGTCTATCGCCTTCTTTTATAACCGGAGTGGGAAATATCTAGCCACAGAATGGAACAC
AGTGAGCAAGCTGGTGATGGGACTGGGCATCACTGTTTGCGTGTTCATCATGTTGGCCAATCTCCTGGTC
ATGGTGGCAATCTACGTCAACCGCCGCTTCCATTTCCCTATTTATTACTTGATGGCCAACCTGGCTGCTG
CAGACTTCTTCGCTGGATTGGCCTACTTCTACCTGATGTTCAATACAGGACCTAATACCCGGAGACTGAC
TGTTAGCACGTGGCTCCTCCGGCAGGGCCTCATTGACACCAGCCTGACAGCTTCTGTGGCCAACCTGCTG
GCTATTGCTATCGAGAGGCACATCACGGTTTTCCGCATGCAGCTCCATACACGAATGAGCAACCGGCGCG
TGGTGGTGGTGATTGTAGTCATCTGGACTATGGCCATTGTGATGGGTGCTATACCCAGTGTGGGCTGGAA
CTGCATCTGTGATATCGATCACTGTTCCAACATGGCACCCCTCTACAGTGACTCCTACTTAGTCTTCTGG
GCCATTTTCAACCTGGTGACCTTTGTGGTCATGGTGGTTCTCTACGCTCACATCTTTGGCTATGTTCGCC
AGAGGACTATGAGGATGTCTCGGCATAGTTCTGGACCCAGGAGGAATCGGGACACCATGATGAGCCTTCT
GAAGACTGTGGTCATTGTGCTTGGTGCCTTTATTGTCTGCTGGACTCCGGGATTGGTCTTGTTATTGCTG
GATGTGTGCTGCCCGCAGTGCGATGTCCTGGCCTATGAGAAGTTCTTCCTCCTCCTGGCCGAGTTCAACT
CTGCTATGAACCCCATCATCTACTCCTACCGCGACAAAGAGATGAGCGCCACCTTCAGGCAGATCCTGTG
TTGCCAGCGCAACGAGAACCCTAATGGCCCCACGGAAGGCTCTGACCGCTCTGCCTCCTCCCTCAACCAC
ACCATTCTGGCTGGAGTTCACAGCAACGACCACTCTGTGGTTTAG

Translation (364 aa):
MAAASTSSPVISQPQFTAMNEQQCFYNESIAFFYNRSGKYLATEWNTVSKLVMGLGITVCVFIMLANLLV
MVAIYVNRRFHFPIYYLMANLAAADFFAGLAYFYLMFNTGPNTRRLTVSTWLLRQGLIDTSLTASVANLL
AIAIERHITVFRMQLHTRMSNRRVVVVIVVIWTMAIVMGAIPSVGWNCICDIDHCSNMAPLYSDSYLVFW
AIFNLVTFVVMVVLYAHIFGYVRQRTMRMSRHSSGPRRNRDTMMSLLKTVVIVLGAFIVCWTPGLVLLLL
DVCCPQCDVLAYEKFFLLLAEFNSAMNPIIYSYRDKEMSATFRQILCCQRNENPNGPTEGSDRSASSLNH
TILAGVHSNDHSVV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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