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Report for CCDS18194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18194.1 Public Mus musculus 4 Rad23b 23 108 98 CCDS HistoryNCBI Gene:19359Re-query CCDS DB by CCDS ID:18194.1Re-query CCDS DB by GeneID:19359See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18194.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030134.8 ENSMUSP00000030134.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030134.8Link to Ensembl Protein Viewer:ENSMUSP00000030134.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030134Re-query CCDS DB by Protein ID:ENSMUSP00000030134
Original member Current member NCBI NM_009011.4 NP_033037.2 Accepted alive Link to Nucleotide Sequence:NM_009011.4Link to Protein Sequence:NP_033037.2Re-query CCDS DB by Nucleotide ID:NM_009011Re-query CCDS DB by Protein ID:NP_033037Link to BLAST:NP_033037.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033037.2 416 P54728 416 100% 0 0

Chromosomal Locations for CCDS 18194.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 55350362 55350427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55366777 55366858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55368045 55368124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55370204 55370472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55378234 55378289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55380989 55381116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55382480 55382615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55383587 55383714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55385410 55385601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 55389884 55389997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1251 nt):
ATGCAGGTCACCCTGAAGACCCTTCAGCAGCAGACCTTCAAGATCGACATCGACCCGGAGGAGACGGTAA
AGGCATTGAAAGAGAAGATTGAATCTGAAAAGGGGAAAGATGCCTTTCCGGTAGCAGGTCAGAAGTTAAT
TTATGCAGGCAAAATCCTCAGTGATGATACTGCTCTCAAAGAATATAAAATTGATGAGAAAAACTTTGTG
GTGGTTATGGTGACAAAACCCAAAGCAGTGACCACAGCAGTGCCAGCTACAACCCAGCCATCAAGTACTC
CCAGCCCCACTGCAGTCAGTTCTTCCCCAGCAGTGGCTGCGGCCCAGGCTCCAGCTCCCACCCCTGCTCT
GCCTCCCACTTCCACTCCTGCCTCCACTGCTCCAGCCTCCACTACAGCCTCTTCTGAACCCGCACCTGCT
GGTGCCACTCAGCCTGAGAAACCTGCAGAAAAGCCAGCCCAGACACCAGTGCTTACTAGCCCAGCACCAG
CTGACAGTACACCAGGAGATTCTTCCCGGTCAAATCTTTTTGAAGATGCAACAAGTGCCCTTGTGACAGG
TCAGTCTTATGAGAATATGGTAACTGAGATCATGTCAATGGGCTATGAACGAGAACAAGTAATTGCAGCC
CTGAGAGCCAGCTTCAACAACCCTGACAGAGCTGTGGAATATCTTCTAATGGGAATCCCTGGAGATAGAG
AAAGTCAGGCTGTGGTTGACCCTCCTCCTCAGGCTGTGAGTACTGGAACTCCTCAGTCTCCAGCAGTAGC
TGCAGCTGCAGCAACCACGACAGCAACTACAACAACCACTTCTGGAGGCCACCCCCTTGAATTTTTACGG
AATCAGCCTCAGTTTCAACAGATGAGACAAATTATCCAGCAGAATCCTTCTTTGCTGCCAGCCTTGCTAC
AGCAGATAGGTCGGGAGAACCCTCAGCTGCTGCAGCAAATTAGCCAACACCAGGAGCATTTTATTCAGAT
GCTGAATGAACCAGTTCAGGAAGCAGGCAGTCAAGGTGGAGGAGGTGGTGGCGGAGGAGGCGGTGGCGGA
GGAGGCGGTGGAGGAATTGCAGAAGCTGGAAGTGGGCACATGAATTACATTCAAGTAACACCTCAGGAGA
AAGAAGCTATAGAACGGTTAAAGGCATTAGGATTTCCTGAAGGACTTGTGATTCAAGCATATTTTGCTTG
TGAGAAGAATGAGAATCTGGCTGCCAACTTTCTTCTACAGCAGAACTTTGATGAAGACTGA

Translation (416 aa):
MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFV
VVMVTKPKAVTTAVPATTQPSSTPSPTAVSSSPAVAAAQAPAPTPALPPTSTPASTAPASTTASSEPAPA
GATQPEKPAEKPAQTPVLTSPAPADSTPGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAA
LRASFNNPDRAVEYLLMGIPGDRESQAVVDPPPQAVSTGTPQSPAVAAAAATTTATTTTTSGGHPLEFLR
NQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGSQGGGGGGGGGGGG
GGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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