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Report for CCDS17656.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17656.1 Public Mus musculus 3 Fmo5 23 108 98 CCDS HistoryNCBI Gene:14263Re-query CCDS DB by CCDS ID:17656.1Re-query CCDS DB by GeneID:14263See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17656.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029729.14 ENSMUSP00000029729.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029729.14Link to Ensembl Protein Viewer:ENSMUSP00000029729.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029729Re-query CCDS DB by Protein ID:ENSMUSP00000029729
Original member Current member EBI ENSMUST00000107049.1 ENSMUSP00000102664.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107049.1Link to Ensembl Protein Viewer:ENSMUSP00000102664.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107049Re-query CCDS DB by Protein ID:ENSMUSP00000102664
Original member Current member EBI ENSMUST00000107050.7 ENSMUSP00000102665.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107050.7Link to Ensembl Protein Viewer:ENSMUSP00000102665.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107050Re-query CCDS DB by Protein ID:ENSMUSP00000102665
Original member Current member NCBI NM_001161763.1 NP_001155235.1 Accepted alive Link to Nucleotide Sequence:NM_001161763.1Link to Protein Sequence:NP_001155235.1Re-query CCDS DB by Nucleotide ID:NM_001161763Re-query CCDS DB by Protein ID:NP_001155235Link to BLAST:NP_001155235.1
Original member Current member NCBI NM_001161765.1 NP_001155237.1 Accepted alive Link to Nucleotide Sequence:NM_001161765.1Link to Protein Sequence:NP_001155237.1Re-query CCDS DB by Nucleotide ID:NM_001161765Re-query CCDS DB by Protein ID:NP_001155237Link to BLAST:NP_001155237.1
Original member Current member NCBI NM_010232.5 NP_034362.2 Accepted alive Link to Nucleotide Sequence:NM_010232.5Link to Protein Sequence:NP_034362.2Re-query CCDS DB by Nucleotide ID:NM_010232Re-query CCDS DB by Protein ID:NP_034362Link to BLAST:NP_034362.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155235.1 533 P97872 533 100% 0 0
NP_001155237.1 533 P97872 533 100% 0 0
NP_034362.2 533 P97872 533 100% 0 0

Chromosomal Locations for CCDS 17656.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97629061 97629195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97635511 97635699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97637481 97637643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97638860 97639002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97641668 97641867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97645568 97645920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97650635 97650707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 97651482 97651827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1602 nt):
ATGGCCAAAAAAAGGATTGCTGTAATTGGAGCAGGAGCTAGCGGGCTCACCTGCATCAAGTGCTGCCTGG
AA
GAGGGCTTGGAACCTGTCTGCTTTGAAAGGTCTGGTGACATCGGAGGACTGTGGAGATTCCAGGAAGC
C
CCTGAGGAAGGCAGGGCCAGTATTTACCAGTCCGTGGTCATCAACACCTCCAAGGAAATGATGTGTTTC
AGT
GACTACCCCATCCCAGATCATTACCCTAACTACATGCACAACTCCCAGGTCCTAGAGTATTTCAGGA
TG
TATGCCAAAGAATTTGACCTTCTCAAATATATCCAATTCAAGACTACAGTGTGCAGCGTGAAGAAGCA
G
CCTGATTTCTCTACCTCGGGCCAATGGCAGGTGGTCACTGAGTGTGAAGGGAAACAGCAGGTAGACGTC
TTC
GATGGAGTCCTGGTGTGCACGGGTCATCACACGGATGCTCACCTGCCCCTGGAAAGCTTTCCTGGAA
TT
GAAAAGTTCAAAGGAAAGTACTTTCACAGCCGAGACTATAAGAACCCAGTGGAATTCACCGGGAAGAG
G
GTCATTGTAATTGGCATTGGGAATTCTGGAGGGGATCTGGCTGTAGAGATTAGCCACACAGCCAAGCAG
GTA
TTCCTCAGTACCAGGAGAGGAGCTTGGATCTTGAACCGTGTAGGCAAGCATGGATATCCTATTGACC
TG
CTACTCTCTTCTCGGATTATGTACTACTTGTCACGTATCTGTGGTCCATCACTAAAAAACAACTATAT
G
GAAAAACAGATGAACCAAAGGTTTGATCATGAAATGTTTGGCCTGAAACCTAAACACAGGGCTCTGAGT
CAG
CATCCAACAGTGAATGATGACCTGCCCAATCGTATCATTGCTGGCTTGGTGAAGGTGAAAGGAAATG
TG
AAGGAATTCACAGAGACAGCCGCCGTATTTGAGGATGGCTCCAGGGAGGATGGCATTGATGTGGTCAT
C
TTTGCCACAGGCTACAGCTTTGCCTTTCCTTTTCTTGAGGACTCTGTCAAAGTAGTAAAAAACAAGGTG
TCC
TTGTACAAAAAGGTCTTTCCACCTAACCTGGAAAAACCAACACTTGCAATCATCGGCTTAATTCAGC
CC
TTGGGAGCCATTATGCCCATTTCAGAGCTCCAAGGACGCTGGGCCACTCAAGTGTTCAAAGGGCTAAA
G
AAATTGCCCTCACAAAGTGAAATGATGGCAGAAATAAATAAGGCTCGAGAGGAAATGGCAAAAAGGTAT
GTG
GACAGCCAGCGTCATACCATCCAGGGAGACTATATAGACACCATGGAAGAGATTGCAGATTTAGTGG
GT
GTCAGGCCCAATATCCTGCCTCTGGTCTTCACTGACCCCAGGCTGGCATTACGGTTACTACTGGGGCC
C
TGTACTCCAGTCCAGTATCGCCTACAGGGCCCTGGAAAGTGGGCTGGAGCCCGGAAAACTATTCTCACC
ACG
GAAGATCGTGTTCGGAAGCCTCTGATGACAAGAGTGGTGGAAAGAGACAGCTCTGGGGGGTCACTGG
TG
ACAGTGCGTGTCCTCATGCTGGCTGTTGCTTTCTTTGCTGTCATCCTGGCTTATTTTTAG


Translation (533 aa):
MAKKRIAVIGAGASGLTCIKCCLEEGLEPVCFERSGDIGGLWRFQEAPEEGRASIYQSVVINTSKEMMCF
S
DYPIPDHYPNYMHNSQVLEYFRMYAKEFDLLKYIQFK
TTVCSVKKQPDFSTSGQWQVVTECEGKQQVDV
F
DGVLVCTGHHTDAHLPLESFP
GIEKFKGKYFHSRDYKNPVEFTGKRVIVIGIGNSGGDLAVEISHTAKQ
V
FLSTRRGAWILNRVGKHGYPIDLLLSSRIMYYLSRICGPSLKNNYMEKQMNQRFDHEMFGLKPKH
RALS
Q
HPTVNDDLPNRIIAGLVKVKGNVKEFTETAAVFEDGSREDGIDVVIFATGYSFAFPFLEDSVKVVKNKV
S
LYKKVFPPNLEKPTLAIIGLIQPLGAIMPISELQGRWATQVFK
GLKKLPSQSEMMAEINKAREEMAKRY
V
DSQRHTIQGDYIDTMEEIADLVGVRPNILPLVFTDPRLALRLLLGPCTPVQYRLQGPGKWAGARKTILT
T
EDRVRKPLMTRVVERDSSGGSLVTVRVLMLAVAFFAVILAYF




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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