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Report for CCDS17513.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17513.1 Public Mus musculus 3 Adar 23 108 98 CCDS HistoryNCBI Gene:56417Re-query CCDS DB by CCDS ID:17513.1Re-query CCDS DB by GeneID:56417See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17513.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029563.13 ENSMUSP00000029563.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029563.13Link to Ensembl Protein Viewer:ENSMUSP00000029563.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029563Re-query CCDS DB by Protein ID:ENSMUSP00000029563
Original member NCBI NM_019655.3 NP_062629.3 Updated not alive Link to Nucleotide Sequence:NM_019655.3Link to Protein Sequence:NP_062629.3Re-query CCDS DB by Nucleotide ID:NM_019655Re-query CCDS DB by Protein ID:NP_062629
Current member NCBI NM_019655.4 NP_062629.3 Accepted alive Link to Nucleotide Sequence:NM_019655.4Link to Protein Sequence:NP_062629.3Re-query CCDS DB by Nucleotide ID:NM_019655Re-query CCDS DB by Protein ID:NP_062629Link to BLAST:NP_062629.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062629.3 1152 Q99MU3-2 1152 100% 0 0

Chromosomal Locations for CCDS 17513.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89730811 89730838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89734842 89736273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89737990 89738173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89739170 89739318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89739833 89739971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89740094 89740278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89745376 89745523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89745820 89745991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89746565 89746658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89747172 89747294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89747538 89747671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89749637 89749819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89750236 89750348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89750628 89750755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89750929 89751175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3459 nt):
ATGTCTCAAGGGTTCAGGGGACCCACAGGGGTGTTCCCTCACCAGACACAGTCGTACTTGGACCCTAGTC
ATGAGCATAGCAAGTGGAGATACCCGCAGCCACAGGGGCCGGAGTCTTACCCTAGGAGTTTCCAGCTTCA
GCAGATAGAGTTTCTCAAAGGGCGGCTCCCAGAAGCACCCTTGATTGGAATACAAACCCAGTCACTGCCG
CCATTCCTCCCAGGACACTGGCCAAGATTCCCAGGGCCACCTGCCCAAGACAGGCAACTGGAAATCTGGG
AGTTCCCCAGGAGTGTGACTCTCAGAAATCAGGGGTTCCACATAGGACCCCCACTTCCTCCCCCACACAG
CAGGGGTACACCATGGAGAGGTGCTGACGGGCTTTGCTCACACTTCCGGGAGCTGAGCATCAGTCAGAGT
CCGGAGCAGAAGGTTCTAAACCGCCTGGAAGAGCTTGGGGAGGGGAAGGCCACCACTGCCCATGTGCTAG
CCAGAGAGCTCAGAATCCCCAAAAGGGACATCAATCGTATTTTGTACTCCCTGGAAAAGAAGGGAAAGCT
GCACAGAGGAAGGGGGAAACCTCCTTTGTGGAGCCTTGTGCCCTTGAGTCAGGCTTGGACTCAGCCCCCT
GGAGTTGTGAATCCAGATAGTTGTATCCAGGAATTCCCTAGAGGAGAGCCTGGTTTGGACAGTGAGGACG
GAGACCCTGCCTCTGACTTAGAAGGACCTTCTGAGCCTCTTGACATGGCTGAAATCAAGGAGAAGATCTG
TGACTATCTGTTCAATGTGTCAAACTCCTCTGCCCTGAACCTGGCTAAGAACATTGGCCTCACCAAGGCC
CGAGATGTGACCTCAGTGCTGATTGACTTGGAAAGGCAAGGCGATGTCTACAGGCAAGGGGCAACTCCTC
CCATCTGGTACTTGACGGACAAGAAGCGTGAGAGGCTGCAGATGAAGAGAAGTACACACAGTGCTCCTGC
CCCTACCCCGACAGCTGTCCCAGAGGCCACTAGAAGCCCCTCATTCCCTGCCTGCCACCCGCCCCCAGCA
GGTGCCTCAAGCAGTGTGGCAGCCTCCAAGAGAGTGGAGAATGGGCAGGAGCCTGCGATAAAGCATGAAA
GTAGGCATGAGGCCAGACCAGGACCAATGAGACTGCGGCCTCACGCTTATCACAATGGCCCCTCTAGAGC
AGGGTATGTGGCCTCTGAAAATGGCCAGTGGGCCACAGATGACATCCCAGATAACTTGAATAGTATCCAC
ACAGCACCAGGTGAGTTTCGAGCCATCATGGAGATGCCCTCCTTCTACAGCCCTACCTTGCCACGGTGTT
CACCCTACAAGAAGCTAACTGAGTGCCAGCTGAAGAACCCTGTCAGCGGGTTGTTAGAGTATGCTCAGTT
CACTAGTCAGACCTGTGATTTCAACCTGATAGAGCAGAGTGGACCGTCCCATGAACCTCGATTTAAATTC
CAGGTTGTCATCAATGGGCGGGAATTTCCCCCAGCTGAGGCTGGCAGCAAGAAAGTAGCCAAGCAGGACG
CAGCAGTGAAAGCCATGGCGATTCTGCTTCGGGAAGCCAAAGCCAAAGACAGTGGTCAACCAGAAGACTT
GTCCCACTGTCCCATGGAAGAAGACTCGGAGAAACCAGCAGAGGCTCAGGCCCCCAGCTCCTCAGCAACA
TCCTTGTTCTCTGGGAAGAGCCCAGTTACTACACTGCTTGAGTGCATGCACAAACTAGGGAACTCCTGTG
AATTCCGTCTCCTGTCCAAAGAAGGCCCTGCTCATGACCCCAAGTTCCAGTACTGTGTAGCAGTAGGAGC
CCAGACCTTCCCCCCTGTGAGCGCCCCCAGCAAGAAGGTAGCAAAGCAGATGGCCGCAGAGGAAGCCATG
AAGGCGCTGCAGGAGGAGGCAGCCAGTTCAGCGGATGACCAGTCTGGAGGTGCGAACACAGACTCACTTG
ATGAATCTATGGCTCCCAACAAGATCAGGAGGATTGGTGAGCTCGTCAGGTACCTGAACACCAACCCCGT
AGGCGGCTTGTTGGAGTACGCCCGATCTCATGGCTTTGCTGCTGAGTTCAAGCTCATTGACCAGTCTGGA
CCTCCTCACGAACCCAAGTTTGTTTACCAAGCAAAAGTTGGGGGCCGCTGGTTTCCAGCCGTGTGTGCAC
ACAGCAAGAAACAGGGCAAGCAGGATGCAGCGGATGCAGCCCTCCGGGTCTTGATCGGGGAGAGCGAGAA
GGCAGAGCAGTTGGGTTTCGCAGAGCTTCCTCTCTCTGGCAGCACCTTCCACGACCAGATAGCTATGCTG
AGCCACAGGTGCTTCAATGCTCTGACCAACAGTTTCCAGCCCTCCCTGCTCGGCCGCAAGATCCTGGCTG
CCATTATTATGAAAAGAGATCCAGAGGACATGGGTGTTGTCGTGAGTTTGGGGACAGGCAATCGCTGTGT
GAAAGGGGACTCTCTCAGCCTGAAGGGAGAGACGGTCAATGACTGCCATGCCGAAATCATCTCCCGGAGG
GGCTTCATCAGGTTTCTCTACAGTGAACTGATGAAGTACAACCACCACACTGCCAAGAACAGCATATTTG
AGCTTGCCAGGGGAGGAGAGAAGCTGCAGATAAAGAAGACGGTTTCTTTTCATCTCTACATCAGCACGGC
GCCATGTGGAGATGGGGCCCTCTTTGACAAATCCTGCAGTGACCGTGCCGTGGAAAGCACAGAGTCCCGC
CATTACCCTGTCTTTGAAAATCCCAAGCAAGGCAAGCTTCGCACCAAGGTGGAGAATGGGGAAGGCACAA
TTCCTGTGGAGTCCAGTGATATTGTACCCACGTGGGATGGCATCCGCCTTGGGGAAAGACTCCGTACCAT
GTCCTGTAGTGACAAAATCCTACGCTGGAATGTGCTGGGCCTGCAAGGGGCGTTGTTGACGCACTTCCTA
CAGCCTGTGTACCTGAAATCTGTAACCTTAGGTTACCTTTTCAGCCAAGGGCATCTGACCCGTGCTATTT
GCTGCCGCGTGACCAGAGATGGGAAAGCATTTGAGGATGGACTACGCTATCCCTTTATTGTCAACCACCC
CAAGGTCGGCCGAGTCAGTGTTTATGATTCCAAAAGACAGTCCGGAAAGACCAAGGAAACAAGCGTCAAC
TGGTGCATGGCTGATGGCTATGACCTAGAGATCCTGGATGGCACCAGAGGCACTGTGGATGGACCAGGGA
AAGAGTTGTCTCGGGTGTCCAAGAAGAATATTTTCCTTCAGTTTAAGAAGCTCTGCTCCTTCCGAGCCCG
CAGAGATTTACTGCAGCTCTCTTATGGTGAAGCCAAGAAAGCTGCCCGTGACTATGACTTAGCCAAGAAC
TACTTCAAGAAAAGCCTGCGAGACATGGGCTATGGGAATTGGATCAGCAAACCCCAGGAGGAAAAGAACT
TTTACCTCTGTCCAGTACCCAATGACTGA

Translation (1152 aa):
MSQGFRGPTGVFPHQTQSYLDPSHEHSKWRYPQPQGPESYPRSFQLQQIEFLKGRLPEAPLIGIQTQSLP
PFLPGHWPRFPGPPAQDRQLEIWEFPRSVTLRNQGFHIGPPLPPPHSRGTPWRGADGLCSHFRELSISQS
PEQKVLNRLEELGEGKATTAHVLARELRIPKRDINRILYSLEKKGKLHRGRGKPPLWSLVPLSQAWTQPP
GVVNPDSCIQEFPRGEPGLDSEDGDPASDLEGPSEPLDMAEIKEKICDYLFNVSNSSALNLAKNIGLTKA
RDVTSVLIDLERQGDVYRQGATPPIWYLTDKKRERLQMKRSTHSAPAPTPTAVPEATRSPSFPACHPPPA
GASSSVAASKRVENGQEPAIKHESRHEARPGPMRLRPHAYHNGPSRAGYVASENGQWATDDIPDNLNSIH
TAPGEFRAIMEMPSFYSPTLPRCSPYKKLTECQLKNPVSGLLEYAQFTSQTCDFNLIEQSGPSHEPRFKF
QVVINGREFPPAEAGSKKVAKQDAAVKAMAILLREAKAKDSGQPEDLSHCPMEEDSEKPAEAQAPSSSAT
SLFSGKSPVTTLLECMHKLGNSCEFRLLSKEGPAHDPKFQYCVAVGAQTFPPVSAPSKKVAKQMAAEEAM
KALQEEAASSADDQSGGANTDSLDESMAPNKIRRIGELVRYLNTNPVGGLLEYARSHGFAAEFKLIDQSG
PPHEPKFVYQAKVGGRWFPAVCAHSKKQGKQDAADAALRVLIGESEKAEQLGFAELPLSGSTFHDQIAML
SHRCFNALTNSFQPSLLGRKILAAIIMKRDPEDMGVVVSLGTGNRCVKGDSLSLKGETVNDCHAEIISRR
GFIRFLYSELMKYNHHTAKNSIFELARGGEKLQIKKTVSFHLYISTAPCGDGALFDKSCSDRAVESTESR
HYPVFENPKQGKLRTKVENGEGTIPVESSDIVPTWDGIRLGERLRTMSCSDKILRWNVLGLQGALLTHFL
QPVYLKSVTLGYLFSQGHLTRAICCRVTRDGKAFEDGLRYPFIVNHPKVGRVSVYDSKRQSGKTKETSVN
WCMADGYDLEILDGTRGTVDGPGKELSRVSKKNIFLQFKKLCSFRARRDLLQLSYGEAKKAARDYDLAKN
YFKKSLRDMGYGNWISKPQEEKNFYLCPVPND


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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