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Report for CCDS17429.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17429.1 Public Mus musculus 3 Gucy1a1 23 108 98 CCDS HistoryNCBI Gene:60596Re-query CCDS DB by CCDS ID:17429.1Re-query CCDS DB by GeneID:60596See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17429.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048976.7 ENSMUSP00000048918.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048976.7Link to Ensembl Protein Viewer:ENSMUSP00000048918.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048976Re-query CCDS DB by Protein ID:ENSMUSP00000048918
Original member Current member EBI ENSMUST00000193924.5 ENSMUSP00000142138.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000193924.5Link to Ensembl Protein Viewer:ENSMUSP00000142138.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000193924Re-query CCDS DB by Protein ID:ENSMUSP00000142138
Original member Current member NCBI NM_001356987.1 NP_001343916.1 Accepted alive Link to Nucleotide Sequence:NM_001356987.1Link to Protein Sequence:NP_001343916.1Re-query CCDS DB by Nucleotide ID:NM_001356987Re-query CCDS DB by Protein ID:NP_001343916Link to BLAST:NP_001343916.1
Original member Current member NCBI NM_001356988.1 NP_001343917.1 Accepted alive Link to Nucleotide Sequence:NM_001356988.1Link to Protein Sequence:NP_001343917.1Re-query CCDS DB by Nucleotide ID:NM_001356988Re-query CCDS DB by Protein ID:NP_001343917Link to BLAST:NP_001343917.1
Original member Current member NCBI NM_021896.6 NP_068696.2 Accepted alive Link to Nucleotide Sequence:NM_021896.6Link to Protein Sequence:NP_068696.2Re-query CCDS DB by Nucleotide ID:NM_021896Re-query CCDS DB by Protein ID:NP_068696Link to BLAST:NP_068696.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343916.1 691 Q9ERL9 691 100% 0 0
NP_001343917.1 691 Q9ERL9 691 100% 0 0
NP_068696.2 691 Q9ERL9 691 100% 0 0

Chromosomal Locations for CCDS 17429.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 82094695 82094899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82097606 82097760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82101984 82102127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82105762 82106247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82108594 82109303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82111153 82111211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82113272 82113333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 82118891 82119145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2076 nt):
ATGTTCTGCAGGAAGTTCAAGGATCTCAAGATCACAGGGGAGTGTCCTTTCTCCTTACTGGCCCCTGGTC
AGGTTCCTAAGGAGCCAACAGAGGAGGTGGCTGGAGGCTCTGAGGGCTGCCAGGCTACTCTGCCCATCTG
CCAGTACTTTCCTGAGAAGAATGCAGAAGGGAGTCTCCCCCAAAGAAAGACAAGCCGCAACAGAGTCTAC
CTGCACACCCTGGCAGAGAGTATTTGCAAGCTCATCTTCCCAGAGTGTGAGCGACTGAACCTTGCACTTC
AGAGAACCTTGGCAAAGCATAAAATAGAAGAAAACAGGAAATCTTCAGAAAAAGAAGACCTTGAAAAAAT
AATCGCAGAAGAAGCAATTGCAGCAGGTGCCCCAGTGGAGGCGCTCAAAGACTCTCTGGGCGAGGAGCTG
TTCAAGATCTGCTATGAGGAAGATGAGCACATTTTGGGCGTGGTTGGCGGCACCCTGAAGGACTTTCTAA
ATAGCTTCAGCACGCTCCTCAAGCAGAGCAGCCACTGCCAAGAGGCGGAGAGGCGGGGACGACTGGAAGA
TGCCTCCATCTTATGCCTGGACAAGGACCAGGACTTTCTAAATGTTTACTACTTCTTCCCGAAGAGAACC
ACAGCCCTGCTTCTCCCTGGTATCATTAAAGCGGCTGCTCGCATACTGTACGAAAGCCACGTGGAGGTGT
CCCTGATGCCTCCCTGCTTCCGAAGTGACTGTACCGAGTTTGTGAACCAGCCCTATTTGCTCTACTCCGT
TCATGTGAAGAGCACCAAGCCGTCCCTGTCCCCAGGCAAGCCCCAGTCCTCGCTAGTGATCCCCGCTTCG
CTCTTCTGCAAGACTTTCCCGTTCCATTTCATGCTGGACCGAGACCTGGCCATCCTGCAGCTGGGTAACG
GCATCAGAAGGCTGGTGAACAAGAGGGACTTCCAAGGGAAGCCCAACTTTGAAGAGTTCTTTGAAATTCT
AACTCCCAAAATCAACCAGACATTTAGTGGCATCATGACAATGTTGAACATGCAGTTTGTCATCCGGGTG
AGGAGATGGGATAACTCGGTGAAGAAATCGTCAAGGGTTATGGATCTCAAAGGTCAAATGATCTACATCG
TTGAATCCAGTGCCATCTTGTTCTTAGGGTCACCATGTGTGGACAGGCTGGAAGATTTCACAGGACGGGG
GCTCTATCTGTCCGACATCCCAATTCATAACGCCCTGAGGGATGTTGTCTTGATAGGGGAGCAGGCACGG
GCTCAAGATGGCCTCAAGAAGAGGTTGGGGAAGCTGAAGGCAACCCTGGAGCATGCCCACCAAGCCCTGG
AGGAGGAGAAGAAGAGGACAGTGGATCTGCTGTGCTCTATCTTCCCCTCTGAGGTTGCTCAGCAGCTGTG
GCAAGGACAAATTGTGCAAGCCAAGAAATTCAGCGAGGTCACCATGCTTTTCTCAGATATCGTAGGGTTC
ACTGCTATCTGCTCTCAGTGTTCACCTCTGCAGGTCATCACGATGCTCAACGCTCTCTACACTCGCTTTG
ACCAGCAGTGTGGAGAGCTGGATGTCTACAAGGTGGAGACCATCGGGGATGCATATTGTGTGGCAGGTGG
ATTGCACAGAGAGAGTGACACCCATGCTGTCCAGATAGCACTGATGGCCCTGAAGATGATGGAGCTCTCC
AATGAGGTCATGTCTCCCCACGGAGAACCTATCAAGATGCGAATTGGACTACATTCTGGATCAGTGTTTG
CTGGAGTTGTCGGAGTGAAGATGCCCCGGTATTGCCTGTTTGGAAACAATGTCACTCTGGCTAACAAATT
TGAATCCTGCAGTGTGCCTCGGAAAATCAATGTCAGCCCCACCACATACAGGTTACTCAAAGACTGTCCT
GGCTTTGTGTTCACCCCGAGATCAAGGGAGGAGCTTCCACCAAACTTCCCTAGTGACATTCCTGGGATCT
GTCACTTTCTGGATGCTTATCACCATCAAGGACCTAATTCCAAACCATGGTTCCAGGATAAAGATGTGGA
AGATGGAAACGCCAACTTCTTAGGCAAAGCGTCAGGGATAGATTAG

Translation (691 aa):
MFCRKFKDLKITGECPFSLLAPGQVPKEPTEEVAGGSEGCQATLPICQYFPEKNAEGSLPQRKTSRNRVY
LHTLAESICKLIFPECERLNLALQRTLAKHKIEENRKSSEKEDLEKIIAEEAIAAGAPVEALKDSLGEEL
FKICYEEDEHILGVVGGTLKDFLNSFSTLLKQSSHCQEAERRGRLEDASILCLDKDQDFLNVYYFFPKRT
TALLLPGIIKAAARILYESHVEVSLMPPCFRSDCTEFVNQPYLLYSVHVKSTKPSLSPGKPQSSLVIPAS
LFCKTFPFHFMLDRDLAILQLGNGIRRLVNKRDFQGKPNFEEFFEILTPKINQTFSGIMTMLNMQFVIRV
RRWDNSVKKSSRVMDLKGQMIYIVESSAILFLGSPCVDRLEDFTGRGLYLSDIPIHNALRDVVLIGEQAR
AQDGLKKRLGKLKATLEHAHQALEEEKKRTVDLLCSIFPSEVAQQLWQGQIVQAKKFSEVTMLFSDIVGF
TAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHRESDTHAVQIALMALKMMELS
NEVMSPHGEPIKMRIGLHSGSVFAGVVGVKMPRYCLFGNNVTLANKFESCSVPRKINVSPTTYRLLKDCP
GFVFTPRSREELPPNFPSDIPGICHFLDAYHHQGPNSKPWFQDKDVEDGNANFLGKASGID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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