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Report for CCDS17243.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17243.1 Public Mus musculus 3 Chmp4c 23 108 98 CCDS HistoryNCBI Gene:66371Re-query CCDS DB by CCDS ID:17243.1Re-query CCDS DB by GeneID:66371See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17243.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029049.6 ENSMUSP00000029049.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029049.6Link to Ensembl Protein Viewer:ENSMUSP00000029049.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029049Re-query CCDS DB by Protein ID:ENSMUSP00000029049
Original member Current member NCBI NM_025519.2 NP_079795.1 Accepted alive Link to Nucleotide Sequence:NM_025519.2Link to Protein Sequence:NP_079795.1Re-query CCDS DB by Nucleotide ID:NM_025519Re-query CCDS DB by Protein ID:NP_079795Link to BLAST:NP_079795.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079795.1 232 Q9D7F7 232 100% 0 0

Chromosomal Locations for CCDS 17243.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10367032 10367221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10385552 10385729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10387037 10387151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10389549 10389702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10389912 10389973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGAGCAAGTTGGGTAAGTTCTTTAAAGGGACCCGCTCCTCCCGGGCCCGGGCGGCTCCCAGCGCCCAGG
AAGCCCTGGCTCGCCTCCGGGAGACGGAGGAGATGCTGGCCAAGAAGCAAGAGTACCTGGAGAACCGAAT
CCAGAGGGAGCTCGCCTTAGCCAAGAAGCACGGCTCCCAGAACAAGCGAGCTGCCTTGCAGGCACTGAAA
AGAAAGAAGAGGTTTGAGAAGCAGCTCACTCAGGTGGATGGCACCCTTTCCACCATCGAGTTCCAGCGAG
AAGCGCTGGAGAACTCGCACACCAACACGGAGGTCTTACGGAACATGGGCTTCGCAGCCAAGGCCATGAA
AGCGGTTCATGACAACATGGACCTCAACAAAATTGATGACTTGATGCAAGATATCACAGAGCAGCAGGAC
ATTGCCCAGGAAATCTCAGAAGCATTTTCTCAAAGGGTTCAGTTTGCCGATGGCTTCGATGAGGCTGAGC
TTCTGGCAGAGCTTGAGGAATTGGAGCAGGAGGAATTAAATAAGAAGATGACAAGCCTGGAGCTTCCAAA
TGTGCCGTCCTCGTCCCTCCCAGCACAGCCCAGTAGGAAAGCCAGCATGCCCTCCTCCGTGCACCGGTCT
CGAGCAGCATCTTCCAGGAGGGCAGAGGAAGATGATGACTTCAAACAACTAGCAGCTTGGGCCACTTAA

Translation (232 aa):
MSKLGKFFKGTRSSRARAAPSAQEALARLRETEEMLAKKQEYLENRIQRELALAKKHGSQNKRAALQALK
RKKRFEKQLTQVDGTLSTIEFQREALENSHTNTEVLRNMGFAAKAMKAVHDNMDLNKIDDLMQDITEQQD
IAQEISEAFSQRVQFADGFDEAELLAELEELEQEELNKKMTSLELPNVPSSSLPAQPSRKASMPSSVHRS
RAASSRRAEEDDDFKQLAAWAT


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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