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Report for CCDS17175.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17175.1 Public Mus musculus 2 Gata5 23 108 98 CCDS HistoryNCBI Gene:14464Re-query CCDS DB by CCDS ID:17175.1Re-query CCDS DB by GeneID:14464See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17175.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015771.2 ENSMUSP00000015771.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015771.2Link to Ensembl Protein Viewer:ENSMUSP00000015771.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000015771Re-query CCDS DB by Protein ID:ENSMUSP00000015771
Original member Current member NCBI NM_008093.2 NP_032119.2 Accepted alive Link to Nucleotide Sequence:NM_008093.2Link to Protein Sequence:NP_032119.2Re-query CCDS DB by Nucleotide ID:NM_008093Re-query CCDS DB by Protein ID:NP_032119Link to BLAST:NP_032119.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032119.2 404 P97489 404 100% 0 0

Chromosomal Locations for CCDS 17175.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180326865 180327020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180327355 180327479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180327760 180327847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180328307 180328432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180332296 180332471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180333826 180334369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGTACCAAAGCTTGGCGTTAGCCCAGAGCCCCGGCCAGGGCACTTACGCCGACTCCGGAGCCTTTCTGC
ACTCTTCGGGAACCGGCTCCCCGGTGTTCGTGGCACCCACTCGCATGCCCTCCATGCTGCCGTACCTGCC
TTCGTGTGAGCCGGGCTCGCAGGCTCCCGCGCTCGCCGCGCACTCCAGCTGGACACAAGCAGTTGCCGCT
GATTCCTCAGCCTTCGGCTCCGGAAGCCCGCACCCGCCAGCCGCACACCCACCGGGAGCCACCACCTTCC
CGTTCGCTCACAGCCCTCCGGGGTCGGGCAGCGGCGGCAGCGCGGGGGTCCGGGACGGCGGCGCCTTCCA
GGGCGCGCTGCTGGCTCGCGAACAGTACCCGACCCCGCTCGGGAGACCCATGGGCGCCTCGTACCCCACA
ACCTACCCAGCATACATGAGTTCCGACGTAGCCCCTTCGTGGACCTCCGGAGCCTTCGACAGCAGCATCC
TGCACGGTCTGCAAGCTCGCCCTGGTGGCCTCCCTGGCCGCAGGACCAGCTTCGTACCTGACTTCTTGGA
GGAGTTCCCTGGTGAGGGCCGGGAGTGCGTCAACTGTGGAGCCCTGTCTACACCACTGTGGCGCAGGGAC
GGCACCGGACACTATCTATGCAATGCCTGCGGCCTCTATCACAAGATGAACGGGGTCAACCGACCGCTAG
TGAGGCCCCAGAAGCGTCTGTCCTCATCCCGAAGATCCGGCCTATGCTGCTCCAACTGCCATACTGCCAC
CACCACCCTCTGGAGGCGCAACTCGGAGGGCGAACCAGTGTGCAACGCCTGTGGCCTCTACATGAAGCTC
CATGGGGTGCCAAGGCCACTGGCAATGAAAAAGGAGAGTATCCAGACAAGAAAACGGAAGCCAAAGAACC
CTGCCAAAATCAAGGGCTCCTCAGGATCCACAGCAAACACCACAGCCTCTTCTCCCACTCTCCTCAACTC
TGAGAGCTCAGCCACCACTTTGAAGGCAGAGTCCAGTCTGGCATCTCCAGTGTGTGCTGGGCCCACTATC
ACCTCCCAGGCCTCCAGCCCAGCGGACGAATCCCTGGCCTCCAGCCATTTGGAGTTCAAGTTCGAACCTG
AAGACTTTGCCTTCACCTCCTCGTCCATGAGCCCCCAGGCTGGTCTCAGTGGGGTCCTACGTCAGGAGAC
CTGGTGTGCTCTGGCCTTGGCCTAG

Translation (404 aa):
MYQSLALAQSPGQGTYADSGAFLHSSGTGSPVFVAPTRMPSMLPYLPSCEPGSQAPALAAHSSWTQAVAA
DSSAFGSGSPHPPAAHPPGATTFPFAHSPPGSGSGGSAGVRDGGAFQGALLAREQYPTPLGRPMGASYPT
TYPAYMSSDVAPSWTSGAFDSSILHGLQARPGGLPGRRTSFVPDFLEEFPGEGRECVNCGALSTPLWRRD
GTGHYLCNACGLYHKMNGVNRPLVRPQKRLSSSRRSGLCCSNCHTATTTLWRRNSEGEPVCNACGLYMKL
HGVPRPLAMKKESIQTRKRKPKNPAKIKGSSGSTANTTASSPTLLNSESSATTLKAESSLASPVCAGPTI
TSQASSPADESLASSHLEFKFEPEDFAFTSSSMSPQAGLSGVLRQETWCALALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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