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Report for CCDS16860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16860.1 Public Mus musculus 2 Vsx1 23 108 98 CCDS HistoryNCBI Gene:114889Re-query CCDS DB by CCDS ID:16860.1Re-query CCDS DB by GeneID:114889See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046095.9 ENSMUSP00000039088.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046095.9Link to Ensembl Protein Viewer:ENSMUSP00000039088.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000046095Re-query CCDS DB by Protein ID:ENSMUSP00000039088
Original member Current member NCBI NM_054068.2 NP_473409.1 Accepted alive Link to Nucleotide Sequence:NM_054068.2Link to Protein Sequence:NP_473409.1Re-query CCDS DB by Nucleotide ID:NM_054068Re-query CCDS DB by Protein ID:NP_473409Link to BLAST:NP_473409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473409.1 363 Q91V10 363 100% 0 0

Chromosomal Locations for CCDS 16860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 150683001 150683266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150684411 150684588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150685594 150685717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150686148 150686226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 150688516 150688960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGACTGGACGGGATGGGCTTTCGGATGCGCGCTCCAGGAGTAGAGCCCTGGCGCCAGGCTGTCCTCCCA
CCGGCTCTCGCCTTCGAAGCTTTGCCATCAATGACCTGCTGGGATTGGAGGCAGACCTGCCAACTCCGGC
GGAGCCTGGGCTAAGATCCAACAGCGGAGATCCAGCGGAGGCAATAGGGTCGGGACCGGGACCGGGGCCA
GGACTCTGCGGCTCCTGCCCTGCTCGCGGGGCTCTCCCGCTGGGCCTGGGGCTCCTCTGCGGCTTCGGGG
CGCAGCCCCCTTCCGCTGCCGCCGCCGCTCGTGCGCGCTGCCTGCTCCTCGCCGACCTGCGGCTTCTGCC
ATCTGCAGGACCCGAGCCTGCTGTCGCCCAGGGCCCGGTCCACCCGCCGCCTGCGCTCGGCAGCCAGCAG
CGCAGCGAGAGCGTCTCCACGTCGGATGGGGACAGTCCATCTGAAGAAAAGAATGACCCGAAGATGTCCC
TTATCCTGGGCAAAAGGAAGAAGCGGAGGCACAGGACGGTTTTCACTGCCCATCAACTCGAAGAACTGGA
GAAGGCCTTTGGTGAGGCCCACTACCCTGACGTGTACGCTCGGGAAATGCTGGCTGCGAAAACAGAGCTC
CCGGAAGACCGAATACAGGTCTGGTTCCAGAACCGGAGGGCCAAGTGGCGTAAGCGAGAGAAGCGCTGGG
GTGGCAGCAGTGTGATGGCTGAGTACGGGCTCTACGGAGCCATGGTGCGCCACTGCATTCCACTGCCGGA
CAGCGTGCTCAACTCTGCAGATAGCCTGCAGGGCTCCTGTGCACCCTGGCTTCTGGGGATGCATAAAAAG
TCCACAGGGATGAGAAAACCAGAAAGTGAAGACAAGTTGGCAGGACTCTGGGAGTTTGACCATCTCAAAA
AGGGTGCTAATAAGGATGAGGATGGACCTGAGAGGGGGCCAGACGAAACAACCCAGAACCCTGAGAATAG
CTTGGAGGATGTGGCCATTGACCTGTCCAGCTCTTCCAGGCAGGAGACTAAGAAAATGCCCCCAGGGTCC
AGTACTCAGCTGCCCCAGCCCCCACAGGTGGGAGCCTCATGA

Translation (363 aa):
MTGRDGLSDARSRSRALAPGCPPTGSRLRSFAINDLLGLEADLPTPAEPGLRSNSGDPAEAIGSGPGPGP
GLCGSCPARGALPLGLGLLCGFGAQPPSAAAAARARCLLLADLRLLPSAGPEPAVAQGPVHPPPALGSQQ
RSESVSTSDGDSPSEEKNDPKMSLILGKRKKRRHRTVFTAHQLEELEKAFGEAHYPDVYAREMLAAKTEL
PEDRIQVWFQNRRAKWRKREKRWGGSSVMAEYGLYGAMVRHCIPLPDSVLNSADSLQGSCAPWLLGMHKK
STGMRKPESEDKLAGLWEFDHLKKGANKDEDGPERGPDETTQNPENSLEDVAIDLSSSSRQETKKMPPGS
STQLPQPPQVGAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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