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Report for CCDS16842.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16842.1 Public Mus musculus 2 Napb 23 108 98 CCDS HistoryNCBI Gene:17957Re-query CCDS DB by CCDS ID:16842.1Re-query CCDS DB by GeneID:17957See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16842.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028926.12 ENSMUSP00000028926.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028926.12Link to Ensembl Protein Viewer:ENSMUSP00000028926.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028926Re-query CCDS DB by Protein ID:ENSMUSP00000028926
Original member NCBI NM_019632.3 NP_062606.1 Updated not alive Link to Nucleotide Sequence:NM_019632.3Link to Protein Sequence:NP_062606.1Re-query CCDS DB by Nucleotide ID:NM_019632Re-query CCDS DB by Protein ID:NP_062606
Current member NCBI NM_019632.4 NP_062606.1 Accepted alive Link to Nucleotide Sequence:NM_019632.4Link to Protein Sequence:NP_062606.1Re-query CCDS DB by Nucleotide ID:NM_019632Re-query CCDS DB by Protein ID:NP_062606Link to BLAST:NP_062606.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062606.1 298 P28663 298 100% 0 0

Chromosomal Locations for CCDS 16842.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 148697396 148697506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148698183 148698233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148698931 148698999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148700373 148700477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148703061 148703145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148703270 148703325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148706946 148707023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148707159 148707205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148709317 148709433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148712675 148712754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 148732266 148732363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (897 nt):
ATGGACAACGCAGGGAAGGAGCGAGAAGCGGTCCAGCTTATGGCGGAGGCCGAGAAGCGAGTGAAGGCTT
CCCACTCTTTCCTCCGAGGGTTGTTCGGAGGAAACACAAGAATAGAAGAGGCATGTGAAATGTATACCAG
AGCTGCAAATATGTTCAAGATGGCCAAGAACTGGAGTGCTGCAGGGAATGCGTTTTGTCAAGCTGCCAAA
CTCCACATGCAGCTCCAGAGCAAGCATGACTCTGCTACCAGCTTTGTGGATGCTGGAAATGCGTACAAGA
AAGCAGACCCTCAAGAGGCTATCAACTGCTTAAATGCAGCCATCGACATTTACACAGACATGGGGAGGTT
CACAATCGCAGCCAAGCACCATATCACCATTGCCGAGATCTATGAGACTGAGCTCGTGGACATTGAGAAG
GCTATTGCACACTATGAACAATCTGCTGATTACTACAAAGGAGAGGAATCTAACAGCTCTGCCAACAAGT
GTCTGCTGAAGGTGGCAGCCTACGCTGCACAGCTGGAGCAGTACCAGAAAGCCATCGAGATCTATGAGCA
GGTGGGAGCAAACACCATGGATAACCCCTTGTTGAAGTACAGTGCAAAGGATTACTTCTTCAAGGCCGCG
CTCTGCCACTTCATAGTGGATGAGCTGAACGCAAAGCTTGCTCTGGAGAAATACGAGGAAATGTTTCCAG
CATTTACGGACTCCAGAGAATGTAAATTATTGAAGAAACTTCTAGAAGCTCATGAGGAACAGAACAGTGA
AGCGTACACTGAAGCAGTGAAGGAGTTTGACTCAATATCACGTTTGGATCAGTGGCTGACCACCATGTTG
CTTCGTATCAAGAAGTCCATCCAAGGGGATGGAGAAGGAGATGGAGACCTCAAGTGA

Translation (298 aa):
MDNAGKEREAVQLMAEAEKRVKASHSFLRGLFGGNTRIEEACEMYTRAANMFKMAKNWSAAGNAFCQAAK
LHMQLQSKHDSATSFVDAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEK
AIAHYEQSADYYKGEESNSSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKAA
LCHFIVDELNAKLALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTTML
LRIKKSIQGDGEGDGDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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