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Report for CCDS16799.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16799.1 Public Mus musculus 2 Btbd3 23 108 98 CCDS HistoryNCBI Gene:228662Re-query CCDS DB by CCDS ID:16799.1Re-query CCDS DB by GeneID:228662See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16799.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091556.11 ENSMUSP00000089144.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091556.11Link to Ensembl Protein Viewer:ENSMUSP00000089144.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000091556Re-query CCDS DB by Protein ID:ENSMUSP00000089144
Original member Current member NCBI NM_001025431.1 NP_001020602.1 Accepted alive Link to Nucleotide Sequence:NM_001025431.1Link to Protein Sequence:NP_001020602.1Re-query CCDS DB by Nucleotide ID:NM_001025431Re-query CCDS DB by Protein ID:NP_001020602Link to BLAST:NP_001020602.1

Chromosomal Locations for CCDS 16799.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 138279115 138279257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138279749 138279839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138280373 138280491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138283458 138284490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGCTGCTGATATATTCCCCCGTAAGAAGCCAGCCAACTCCAGCAGCACCACTGTCCAGCAGCAACACC
AGCACAACCTCTGTAACAACAACCTCATCCCGGCCCCCAACTGGCAGGGTCTTTATCCCACCATCCGAGA
AAGAAATGCGGTGATGTTCAATAATGACTTGATGGCAGACGTACATTTTGTGGTTGGGCCACCAGGTGGG
ACTCAGCGGTTGCCAGGACACAAATACGTCCTCGCTGTCGGGAGCTCAGTGTTCCATGCAATGTTTTACG
GAGAACTCGCTGAGGACAAAGATGAAATCCGAATCCCAGACGTCGAACCTGCTGCCTTCCTCGCCATGCT
GAAATACATCTATTGTGATGAAATTGACTTGGCTGCAGACACAGTGCTGGCCACACTGTATGCTGCCAAA
AAGTACATAGTTCCTCACCTCGCCAGAGCCTGTGTTAATTTCCTGGAGACCAGCCTAAGCGCCAAGAACG
CCTGCGTACTCCTCTCCCAGAGCTGCCTGTTTGAGGAGCCGGACCTGACACAGCGTTGCTGGGAGGTGAT
TGATGCCCAGGCCGAGTTAGCGCTCAAGTCTGAGGGATTCTGTGACATCGACTTCCAGACACTCGAAAGT
ATCCTCCGCAGGGAAACTCTGAATGCCAAAGAAATAGTGGTTTTTGAGGCAGCCCTGAACTGGGCTGAGG
TAGAATGCCAGCGGCAAGATCTGGCCCTGAGCATTGAAAATAAACGCAAGGTCCTAGGAAAGGCCCTGTA
CTTGATCCGCATCCCTACCATGGCCCTGGATGACTTTGCAAATGGTGCTGCACAGTCTGGGGTATTGACT
CTCAATGAGACCAATGACATCTTCCTCTGGTACACTGCATCCAAAAAACCAGAGCTGCAGTTTGTGAGTA
AAGCCCGCAAGGGCCTGGTCCCCCAGCGTTGCCACCGATTTCAGTCATGTGCCTATCGGAGCAACCAGTG
GCGCTATCGGGGTCGCTGTGACAGCATCCAGTTTGCTGTTGATAAGAGGGTGTTCATCGCAGGCTTTGGG
CTGTACGGCTCCAGCTGTGGCTCTGCCGAGTACAGCGCAAAGATCGAACTCAAACGGCAGGGCGTTGTCC
TGGGCCAGAACTTGAGCAAGTACTTCTCAGACGGATCCAGCAATACCTTCCCTGTGTGGTTTGAGTATCC
AGTGCAGATTGAGCCGGACACCTTCTACACAGCCAGTGTAGTGCTGGACGGCAATGAACTCAGCTACTTT
GGGCAGGAAGGCATGACGGAAGTTCAGTGTGGCAAGGTGACTGTCCAGTTCCAGTGCTCCTCAGACAGCA
CCAATGGCACTGGTGTACAGGGAGGGCAGATCCCCGAACTCATATTCTACGCCTGA

Translation (461 aa):
MAADIFPRKKPANSSSTTVQQQHQHNLCNNNLIPAPNWQGLYPTIRERNAVMFNNDLMADVHFVVGPPGG
TQRLPGHKYVLAVGSSVFHAMFYGELAEDKDEIRIPDVEPAAFLAMLKYIYCDEIDLAADTVLATLYAAK
KYIVPHLARACVNFLETSLSAKNACVLLSQSCLFEEPDLTQRCWEVIDAQAELALKSEGFCDIDFQTLES
ILRRETLNAKEIVVFEAALNWAEVECQRQDLALSIENKRKVLGKALYLIRIPTMALDDFANGAAQSGVLT
LNETNDIFLWYTASKKPELQFVSKARKGLVPQRCHRFQSCAYRSNQWRYRGRCDSIQFAVDKRVFIAGFG
LYGSSCGSAEYSAKIELKRQGVVLGQNLSKYFSDGSSNTFPVWFEYPVQIEPDTFYTASVVLDGNELSYF
GQEGMTEVQCGKVTVQFQCSSDSTNGTGVQGGQIPELIFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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