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Report for CCDS16798.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16798.1 Public Mus musculus 2 Btbd3 23 108 98 CCDS HistoryNCBI Gene:228662Re-query CCDS DB by CCDS ID:16798.1Re-query CCDS DB by GeneID:228662See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16798.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075410.4 ENSMUSP00000074864.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075410.4Link to Ensembl Protein Viewer:ENSMUSP00000074864.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000075410Re-query CCDS DB by Protein ID:ENSMUSP00000074864
Original member Current member NCBI NM_145534.2 NP_663509.2 Accepted alive Link to Nucleotide Sequence:NM_145534.2Link to Protein Sequence:NP_663509.2Re-query CCDS DB by Nucleotide ID:NM_145534Re-query CCDS DB by Protein ID:NP_663509Link to BLAST:NP_663509.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663509.2 530 P58545 530 100% 0 0

Chromosomal Locations for CCDS 16798.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 138278908 138279257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138279749 138279839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138280373 138280491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 138283458 138284490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGTAGATGATAAAGAAAAGAACATGAAATGTCTCACCTTCTTCTTGATGCTTCCAGAGACAGTAAAGA
ACAGGTCCAAAAAAGGTTCAAAGAAAGCCAACAGCAGCGGTGGCGGCGGCGGCGGCGGCAGCGTTGGCAG
TGGGAGCAGCAAGTTGCCCCCAGTTTGTTATGAAATAATTACCTTGAAGACTAAAAAGAAGAAGAAGATG
GCTGCTGATATATTCCCCCGTAAGAAGCCAGCCAACTCCAGCAGCACCACTGTCCAGCAGCAACACCAGC
ACAACCTCTGTAACAACAACCTCATCCCGGCCCCCAACTGGCAGGGTCTTTATCCCACCATCCGAGAAAG
AAATGCGGTGATGTTCAATAATGACTTGATGGCAGACGTACATTTTGTGGTTGGGCCACCAGGTGGGACT
CAGCGGTTGCCAGGACACAAATACGTCCTCGCTGTCGGGAGCTCAGTGTTCCATGCAATGTTTTACGGAG
AACTCGCTGAGGACAAAGATGAAATCCGAATCCCAGACGTCGAACCTGCTGCCTTCCTCGCCATGCTGAA
ATACATCTATTGTGATGAAATTGACTTGGCTGCAGACACAGTGCTGGCCACACTGTATGCTGCCAAAAAG
TACATAGTTCCTCACCTCGCCAGAGCCTGTGTTAATTTCCTGGAGACCAGCCTAAGCGCCAAGAACGCCT
GCGTACTCCTCTCCCAGAGCTGCCTGTTTGAGGAGCCGGACCTGACACAGCGTTGCTGGGAGGTGATTGA
TGCCCAGGCCGAGTTAGCGCTCAAGTCTGAGGGATTCTGTGACATCGACTTCCAGACACTCGAAAGTATC
CTCCGCAGGGAAACTCTGAATGCCAAAGAAATAGTGGTTTTTGAGGCAGCCCTGAACTGGGCTGAGGTAG
AATGCCAGCGGCAAGATCTGGCCCTGAGCATTGAAAATAAACGCAAGGTCCTAGGAAAGGCCCTGTACTT
GATCCGCATCCCTACCATGGCCCTGGATGACTTTGCAAATGGTGCTGCACAGTCTGGGGTATTGACTCTC
AATGAGACCAATGACATCTTCCTCTGGTACACTGCATCCAAAAAACCAGAGCTGCAGTTTGTGAGTAAAG
CCCGCAAGGGCCTGGTCCCCCAGCGTTGCCACCGATTTCAGTCATGTGCCTATCGGAGCAACCAGTGGCG
CTATCGGGGTCGCTGTGACAGCATCCAGTTTGCTGTTGATAAGAGGGTGTTCATCGCAGGCTTTGGGCTG
TACGGCTCCAGCTGTGGCTCTGCCGAGTACAGCGCAAAGATCGAACTCAAACGGCAGGGCGTTGTCCTGG
GCCAGAACTTGAGCAAGTACTTCTCAGACGGATCCAGCAATACCTTCCCTGTGTGGTTTGAGTATCCAGT
GCAGATTGAGCCGGACACCTTCTACACAGCCAGTGTAGTGCTGGACGGCAATGAACTCAGCTACTTTGGG
CAGGAAGGCATGACGGAAGTTCAGTGTGGCAAGGTGACTGTCCAGTTCCAGTGCTCCTCAGACAGCACCA
ATGGCACTGGTGTACAGGGAGGGCAGATCCCCGAACTCATATTCTACGCCTGA

Translation (530 aa):
MVDDKEKNMKCLTFFLMLPETVKNRSKKGSKKANSSGGGGGGGSVGSGSSKLPPVCYEIITLKTKKKKKM
AADIFPRKKPANSSSTTVQQQHQHNLCNNNLIPAPNWQGLYPTIRERNAVMFNNDLMADVHFVVGPPGGT
QRLPGHKYVLAVGSSVFHAMFYGELAEDKDEIRIPDVEPAAFLAMLKYIYCDEIDLAADTVLATLYAAKK
YIVPHLARACVNFLETSLSAKNACVLLSQSCLFEEPDLTQRCWEVIDAQAELALKSEGFCDIDFQTLESI
LRRETLNAKEIVVFEAALNWAEVECQRQDLALSIENKRKVLGKALYLIRIPTMALDDFANGAAQSGVLTL
NETNDIFLWYTASKKPELQFVSKARKGLVPQRCHRFQSCAYRSNQWRYRGRCDSIQFAVDKRVFIAGFGL
YGSSCGSAEYSAKIELKRQGVVLGQNLSKYFSDGSSNTFPVWFEYPVQIEPDTFYTASVVLDGNELSYFG
QEGMTEVQCGKVTVQFQCSSDSTNGTGVQGGQIPELIFYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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