NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16700.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16700.1 Public Mus musculus 2 Astl 23 108 98 CCDS HistoryNCBI Gene:215095Re-query CCDS DB by CCDS ID:16700.1Re-query CCDS DB by GeneID:215095See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16700.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059839.8 ENSMUSP00000054456.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059839.8Link to Ensembl Protein Viewer:ENSMUSP00000054456.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000059839Re-query CCDS DB by Protein ID:ENSMUSP00000054456
Original member Current member EBI ENSMUST00000179618.7 ENSMUSP00000135987.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179618.7Link to Ensembl Protein Viewer:ENSMUSP00000135987.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179618Re-query CCDS DB by Protein ID:ENSMUSP00000135987
Original member Current member NCBI NM_172539.3 NP_766127.1 Accepted alive Link to Nucleotide Sequence:NM_172539.3Link to Protein Sequence:NP_766127.1Re-query CCDS DB by Nucleotide ID:NM_172539Re-query CCDS DB by Protein ID:NP_766127Link to BLAST:NP_766127.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766127.1 414 Q6HA09-2 414 100% 0 0

Chromosomal Locations for CCDS 16700.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127342359 127342476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127343954 127344015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127345450 127345543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127345941 127346058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127347148 127347329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127350164 127350245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127350458 127350612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127356341 127356774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGGAGCACCCTCAGCATCCAGATGTTCTGGAGTCTGCAGTACCAGTGTTCCAGAAGGCTTCACTCCTG
AGGGAAGCCCGGTATTTCAGGACAAGGACATCCCCGCAATTAACCAAGGGCTCATCTCAGAGGAGACCCC
AGAAAGCAGCTTCCTGGTAGAAGGGGACATTATCCGGCCAAGCCCTTTCCGATTGTTGTCAGTGACCAAT
AATAAATGGCCCAAGGGCGTTGGTGGCTTTGTGGAGATCCCCTTCCTGCTTTCCAGAAAGTATGATGAAC
TCAGCCGCCGGGTCATTATGGATGCCTTTGCTGAGTTTGAACGTTTCACATGCATCCGGTTTGTTGCCTA
CCATGGTCAGAGAGACTTTGTTTCCATTCTTCCTATGGCGGGGTGTTTCTCTGGTGTGGGACGCAGTGGA
GGGATGCAGGTGGTGTCCTTGGCACCCACTTGTCTCCGGAAGGGCCGAGGCATTGTCCTACATGAGCTCA
TGCACGTACTTGGCTTCTGGCATGAGCATTCACGGGCAGATCGGGACCGCTACATCCAAGTCAACTGGAA
CGAGATCCTCCCGGGCTTTGAAATCAACTTCATCAAGTCACGGAGTACCAATATGTTAGTTCCCTATGAC
TACTCATCTGTGATGCATTATGGGAGATTTGCCTTCAGCTGGCGTGGGCAGCCCACCATCATACCACTCT
GGACCTCCAGTGTTCACATTGGCCAGCGATGGAACCTGAGTACCTCAGATATCACCCGGGTCTGCAGGCT
GTATAACTGCAGCCGGAGTGTCCCTGACTCCCACGGGAGAGGGTTTGAGGCCCAGAGTGATGGAAGCAGC
CTCACCCCTGCCTCTATATCACGTCTACAAAGACTTCTCGAGGCACTGTCAGAGGAATCTGGAAGCTCTG
CCCCTAGTGGCTCCAGGACTGGAGGCCAGAGTATTGCCGGGCTTGGTAACAGCCAGCAAGGATGGGAGCA
TCCTCCTCAGAGCACATTCAGTGTGGGAGCCTTGGCAAGACCACCTCAGATGCTAGCCGATGCTTCAAAA
TCGGGGCCTGGAGCAGGTGCAGACAGCTTGTCTCTAGAGCAGTTCCAGCTAGCCCAGGCCCCCACTGTAC
CTCTTGCTCTATTTCCAGAAGCCAGAGACAAGCCAGCACCTATCCAAGATGCCTTTGAGAGGCTAGCTCC
ACTTCCAGGAGGCTGTGCACCTGGAAGTCACATTAGAGAGGTGCCCAGAGACTGA

Translation (414 aa):
MGAPSASRCSGVCSTSVPEGFTPEGSPVFQDKDIPAINQGLISEETPESSFLVEGDIIRPSPFRLLSVTN
NKWPKGVGGFVEIPFLLSRKYDELSRRVIMDAFAEFERFTCIRFVAYHGQRDFVSILPMAGCFSGVGRSG
GMQVVSLAPTCLRKGRGIVLHELMHVLGFWHEHSRADRDRYIQVNWNEILPGFEINFIKSRSTNMLVPYD
YSSVMHYGRFAFSWRGQPTIIPLWTSSVHIGQRWNLSTSDITRVCRLYNCSRSVPDSHGRGFEAQSDGSS
LTPASISRLQRLLEALSEESGSSAPSGSRTGGQSIAGLGNSQQGWEHPPQSTFSVGALARPPQMLADASK
SGPGAGADSLSLEQFQLAQAPTVPLALFPEARDKPAPIQDAFERLAPLPGGCAPGSHIREVPRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH