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Report for CCDS16132.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16132.1 Public Mus musculus 2 Chrna1 23 108 98 CCDS HistoryNCBI Gene:11435Re-query CCDS DB by CCDS ID:16132.1Re-query CCDS DB by GeneID:11435See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16132.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028515.3 ENSMUSP00000028515.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028515.3Link to Ensembl Protein Viewer:ENSMUSP00000028515.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028515Re-query CCDS DB by Protein ID:ENSMUSP00000028515
Original member Current member NCBI NM_007389.5 NP_031415.2 Accepted alive Link to Nucleotide Sequence:NM_007389.5Link to Protein Sequence:NP_031415.2Re-query CCDS DB by Nucleotide ID:NM_007389Re-query CCDS DB by Protein ID:NP_031415Link to BLAST:NP_031415.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031415.2 457 P04756 457 100% 0 0

Chromosomal Locations for CCDS 16132.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 73566176 73566307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73566702 73566941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73568092 73568315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73570407 73570644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73571413 73571608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73573260 73573369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73574321 73574365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73574486 73574631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73580245 73580287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGAGCTCTCGACTGTTCTCCTGCTGCTAGGCCTCTGCTCCGCTGGCCTTGTTCTGGGCTCCGAACATG
AGACGCGTCTGGTGGCAAAGCTCTTTGAAGACTACAGCAGTGTAGTCCGGCCAGTGGAGGACCACCGTGA
GATTGTACAAGTCACCGTGGGTCTACAGCTGATCCAGCTTATCAATGTGGATGAAGTAAATCAGATTGTG
ACAACCAATGTACGTCTGAAACAGCAATGGGTCGATTACAACTTGAAATGGAATCCAGATGACTATGGAG
GAGTGAAAAAAATTCACATCCCCTCGGAAAAGATCTGGCGGCCGGACGTCGTTCTCTATAACAACGCAGA
CGGCGACTTTGCCATTGTCAAATTCACCAAGGTGCTCCTGGACTACACCGGCCACATCACCTGGACACCG
CCAGCCATCTTTAAAAGCTACTGTGAGATCATTGTCACTCACTTTCCCTTCGATGAGCAGAACTGCAGCA
TGAAGCTGGGCACCTGGACCTATGACGGCTCTGTGGTGGCCATTAACCCGGAAAGTGACCAGCCCGACCT
GAGTAACTTCATGGAGAGCGGGGAGTGGGTGATCAAGGAAGCTCGGGGCTGGAAGCACTGGGTGTTCTAC
TCCTGCTGCCCCACCACTCCCTACCTGGACATCACCTACCACTTCGTCATGCAGCGCCTGCCCCTCTACT
TCATTGTCAACGTCATCATTCCCTGCCTGCTCTTCTCCTTCTTAACCAGCCTGGTGTTCTACCTGCCCAC
AGACTCAGGGGAGAAGATGACGCTGAGCATCTCTGTCTTACTGTCCCTGACCGTGTTCCTTCTGGTCATT
GTGGAGCTAATCCCTTCCACCTCCAGCGCTGTGCCCCTGATCGGGAAGTATATGTTGTTCACCATGGTCT
TTGTCATTGCGTCCATCATCATCACCGTCATCGTCATCAACACACACCACCGTTCGCCCAGCACCCACAT
CATGCCCGAGTGGGTGCGGAAGGTTTTTATCGACACTATCCCAAACATCATGTTTTTCTCCACAATGAAA
AGACCATCCAGAGATAAACAAGAGAAAAGGATTTTTACAGAAGACATAGATATATCTGACATCTCTGGGA
AGCCGGGTCCTCCACCTATGGGCTTTCACTCTCCGCTGATCAAGCACCCTGAGGTGAAAAGCGCCATCGA
GGGCGTGAAGTACATTGCAGAGACCATGAAGTCAGACCAGGAGTCCAATAACGCCGCTGAGGAATGGAAG
TATGTTGCCATGGTGATGGATCACATCCTCCTCGGAGTCTTTATGCTGGTGTGTCTCATCGGGACGCTGG
CTGTGTTTGCAGGTCGGCTCATTGAGTTACATCAACAAGGATGA

Translation (457 aa):
MELSTVLLLLGLCSAGLVLGSEHETRLVAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIV
TTNVRLKQQWVDYNLKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIVKFTKVLLDYTGHITWTP
PAIFKSYCEIIVTHFPFDEQNCSMKLGTWTYDGSVVAINPESDQPDLSNFMESGEWVIKEARGWKHWVFY
SCCPTTPYLDITYHFVMQRLPLYFIVNVIIPCLLFSFLTSLVFYLPTDSGEKMTLSISVLLSLTVFLLVI
VELIPSTSSAVPLIGKYMLFTMVFVIASIIITVIVINTHHRSPSTHIMPEWVRKVFIDTIPNIMFFSTMK
RPSRDKQEKRIFTEDIDISDISGKPGPPPMGFHSPLIKHPEVKSAIEGVKYIAETMKSDQESNNAAEEWK
YVAMVMDHILLGVFMLVCLIGTLAVFAGRLIELHQQG


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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