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Report for CCDS15930.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15930.2 Public Mus musculus 2 Ttc16 23 108 98 CCDS HistoryNCBI Gene:338348Re-query CCDS DB by CCDS ID:15930.2Re-query CCDS DB by GeneID:338348See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15930.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15930.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161430.7 ENSMUSP00000124031.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161430.7Link to Ensembl Protein Viewer:ENSMUSP00000124031.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161430Re-query CCDS DB by Protein ID:ENSMUSP00000124031
Original member Current member NCBI NM_177384.3 NP_796358.2 Accepted alive Link to Nucleotide Sequence:NM_177384.3Link to Protein Sequence:NP_796358.2Re-query CCDS DB by Nucleotide ID:NM_177384Re-query CCDS DB by Protein ID:NP_796358Link to BLAST:NP_796358.2

Chromosomal Locations for CCDS 15930.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32762341 32763005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32764893 32764968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32767178 32767301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32767473 32767615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32767937 32768102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32768842 32768983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32769098 32769342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32770052 32770266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32771889 32772018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32772110 32772210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32773665 32773808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32773982 32774072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32774391 32774557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32775048 32775095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32775331 32775348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2475 nt):
ATGACAGACAGAAGCAAGACTCAGAGAACTCCATCTGCCTCTAGCTCTAGAACGGGGTTATTAAAGGAGC
CTCACAGTGCCCGTTCCCAGAAAACTCCAAAGCTAAAGGTTCCTGAAGCCCCAGAGAAGATCCTGCGACG
CATCTTTGGGACCAGTCATGTGTTCTATGTTATGACAGATCCTACAAAACGAAGGATGATAGGATCAACA
GTGCCTGCCAAAGTCAGAGAGTACTATAACCAAGGCCATCAGTGCCTCCTACAAGAGGACTGGGAGATGT
CTGTGCTGTTCTTCTCCCGTGCCCTCCACCTGGACCCCAAACTGGTAGACTTCTATGTATTCCGTGCTGA
GGCCTTCATCCAACTCTGTGACTTCTCCTCTGCCCTCCAGAACCTCCGCAGGGCCTACTCCTATGACCCA
GGGAATAACAAGTACCTGAACCGGCTGGCCTTTGTGCTCTACCTACAGGGTCAGTGCCTGTATGAGCTGT
GTGACTTCCAGGAAGCCCTCTGTGTCTTCCTGCAAGCCTCCGACCTCCAGCCCCAAAACGCTTCCTTCAG
TTACCGATGCATGGCCTGCCTGCTGGCCCTCAAGCGGTATCACGACTGCCTCGCCCTCATCACTAGGGAG
GTGAAGCAGGGCAGGGCCAGCGCTGATGTCTACATCCTCCGGGCTCGGCTCTACAACTTCTTCCAGAAGG
CCAAGCTCTGCTATCAGGACCTTCGAAGCGCCTTGCTCCTAGATCCCTTGCACGCACAGGCCAAAGGGCT
ACTCCAGAAGATGGTGGACCAGGCCAAGCAGTCTCTCCAAGATGCCAGCACCCTGGCCGTGCAGGGCAAG
GTGCACCGTGCACTGAAGTGCATCAACTGTGCCATTGAGAACAATCCCCTGGATCCCAACTTCTTCTTCT
TCCGGGGCACCTTGCGTAGACGGCTCCAGCAATTTGACCATGCTGTGGAAGACTTCCTGAAGGCAATGGA
CATGGTGACTGACACCCAGGACAACCTAGTGAAGCAGGCGCAGCGTCAGCTGCTGCTGACTTACAATGAC
TTTGCTGTGCACTGCTACAACCATGGTGCCTATCAGGAGGGCGTGCTGCTGCTGAACAAGGCTATCAGAG
ACGAGCAGAATGAGAAGGGCTTGTACATCAACCGTGGGGATTGCTTCTTCCAGCTGGGCAACCTGGCCTT
CGCGGAGGCTGACTACAAGCAAGCGCTGGCCCTGAGCCCGCTGGATGAAGGAGCCAACTTGCGCATGGGT
GTGCTGCAGGAGAAGCTGGGCTTCTGCCAGCAGAAACACAGGCAGTTCCAGACAGCAGAGGAGCACTTCT
CGGAGGCCATAAGGCACAGCCCTCAGAAACCACAGTACTACCTGCACCGGGCCAAGTGCCGACAGTTCCT
GCAGAACACTCTGGGGGCCCGCCTGGATGTCGCTACTGTACTGCTTCTCAATCCCGAGTATCCCAAGATG
GCTGCAGTGATGAACACCCTCTTTCCTAGCATGACTGTGGAGAATGTGCTTAAGTCCCAAGTGGCCGAAC
TGGCCAAGCTCCAGCTAAGTCGGATGATAGAAAATGGGCCGAAGAACATCTACCCTCAGAGCACTGTGGT
GCAGCGGTTATTGGAACGCAGGAAAGCCCAAGTCCTGGTGAAGCTCTGGAAGCAGGAACGTCTTGGGACC
CCTGAAGAGGAAGTGACTCTTTACCAGGCTCCGCAGCTGGCAGAGGAAAAAAAGGTGAAAACCGCTCGCA
GAAGGACATCCCTGACAGACAGCTATGCGGACCAGACCTCCTCAGGCTCCGTCTTTAGCATTGTGAGCAT
CAGCACGTCGGGGCCAGAGATGTCAACCAGTCAGGAGTATAAGAGCTCTTCCCACACGGCTATAGAATCC
TCTGAGTCCACACTGCTAAAGCCTCAGCTCTCAGTACCCAGGAAGAGCCAGGAACTGACCTGGAGCCCCA
AGGTCGTCCAGGCAGTCACAGAGAACCTAATCCAGAACGCCACTGAGGTCACACCTGCCTATGGCCAAAG
GGACTCCAAAAAGGCCACCCAAGTCCCAAAGCCCAAGAAGACAGAGGATCCCAAGGATCCTAGCCAGAGC
ACCAGCACGACAGAAGCCCCTGAGGGCCCAAGGCCTAGCAAGTCCAGGTCTACCCTGAGCGTAAAGGAGA
GAATCAGAAGAGCTAAGGCTGTTCGCGCCCAGGGCTGGAAACTCAAGGCCCAGCGCAGCAGCCAGAAAGT
AACAAAGACTCCCAGCCTGACCCACAGCACGACCCATAGTGACATTGGTGAGAGTGCCAATGATACCCCG
GGCCAGACTCCATGGCCCAGCAAGGCTGCTGATAGCTTAAGCTTCAGTGAGATCTCGTCAACAGATCTCA
GCAGTAGTGAAAGCTTCTTGGAACTGACTAACCTTTTAACTCAGGAAGTCCAACAGATCCCAGGAGACAG
AGAGAAGCTCACCTCTGACGATTAA

Translation (824 aa):
MTDRSKTQRTPSASSSRTGLLKEPHSARSQKTPKLKVPEAPEKILRRIFGTSHVFYVMTDPTKRRMIGST
VPAKVREYYNQGHQCLLQEDWEMSVLFFSRALHLDPKLVDFYVFRAEAFIQLCDFSSALQNLRRAYSYDP
GNNKYLNRLAFVLYLQGQCLYELCDFQEALCVFLQASDLQPQNASFSYRCMACLLALKRYHDCLALITRE
VKQGRASADVYILRARLYNFFQKAKLCYQDLRSALLLDPLHAQAKGLLQKMVDQAKQSLQDASTLAVQGK
VHRALKCINCAIENNPLDPNFFFFRGTLRRRLQQFDHAVEDFLKAMDMVTDTQDNLVKQAQRQLLLTYND
FAVHCYNHGAYQEGVLLLNKAIRDEQNEKGLYINRGDCFFQLGNLAFAEADYKQALALSPLDEGANLRMG
VLQEKLGFCQQKHRQFQTAEEHFSEAIRHSPQKPQYYLHRAKCRQFLQNTLGARLDVATVLLLNPEYPKM
AAVMNTLFPSMTVENVLKSQVAELAKLQLSRMIENGPKNIYPQSTVVQRLLERRKAQVLVKLWKQERLGT
PEEEVTLYQAPQLAEEKKVKTARRRTSLTDSYADQTSSGSVFSIVSISTSGPEMSTSQEYKSSSHTAIES
SESTLLKPQLSVPRKSQELTWSPKVVQAVTENLIQNATEVTPAYGQRDSKKATQVPKPKKTEDPKDPSQS
TSTTEAPEGPRPSKSRSTLSVKERIRRAKAVRAQGWKLKAQRSSQKVTKTPSLTHSTTHSDIGESANDTP
GQTPWPSKAADSLSFSEISSTDLSSSESFLELTNLLTQEVQQIPGDREKLTSDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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