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Report for CCDS15888.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15888.1 Public Mus musculus 2 Prrx2 23 108 98 CCDS HistoryNCBI Gene:20204Re-query CCDS DB by CCDS ID:15888.1Re-query CCDS DB by GeneID:20204See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15888.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041659.6 ENSMUSP00000040332.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041659.6Link to Ensembl Protein Viewer:ENSMUSP00000040332.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041659Re-query CCDS DB by Protein ID:ENSMUSP00000040332
Original member NCBI NM_009116.2 NP_033142.2 Updated not alive Link to Nucleotide Sequence:NM_009116.2Link to Protein Sequence:NP_033142.2Re-query CCDS DB by Nucleotide ID:NM_009116Re-query CCDS DB by Protein ID:NP_033142
Current member NCBI NM_009116.3 NP_033142.2 Accepted alive Link to Nucleotide Sequence:NM_009116.3Link to Protein Sequence:NP_033142.2Re-query CCDS DB by Nucleotide ID:NM_009116Re-query CCDS DB by Protein ID:NP_033142Link to BLAST:NP_033142.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033142.2 247 Q06348 247 99.1903% 0 2

Chromosomal Locations for CCDS 15888.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30845435 30845681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30878410 30878591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30879492 30879670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30880795 30880930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGACAGCGCGGCCGCCGCCTTCGCCCTAGACCCGCCAGCGCCCGGCCCGGGGCCCCCGCCCGCACCCG
GCGATTGCGCCCAGGCGCGCAAGAACTTCTCGGTGAGCCACCTCCTGGACCTGGAGGAGGTGGCGGCTGC
TGGGCGCAGGGCTGCGGGGCCCGTTTCGGGGCCCGCCGAGGCGCGGGAGGGAGCGGCGCGCGAACCGTCC
GGGGGCAGCAGCGGCAGCGAGGCGGCGCCGCAGGACGGTGACTGTCCCAGCCCCGGCCGTGGCACCAAAC
GAAAGAAGAAGCAGCGCCGGAATCGAACCACATTCAACAGCAGCCAGCTGCAGGCGCTGGAGCGTGTATT
TGAGCGCACACACTACCCTGACGCCTTTGTGCGTGAAGAGCTAGCTCGCCGTGTCAACCTCAGTGAGGCA
CGTGTCCAAGTCTGGTTCCAGAACCGCCGTGCCAAGTTTCGCCGGAATGAACGTGCCATGCTGGCTACCC
GCTCTGCCTCGTTGCTCAAGTCTTATGGCCAGGAGGCGGCCATTGAACAGCCTGTGGCCCCCCGACCTAC
CACGATGAGCCCAGATTATCTATCCTGGCCAGCATCCTCCCCCTACAGCTCCGTGCCTCCCTATAGCCCC
GGAGGTTCAAGTCCTGCAACTCCTGGAGTCAACATGGCCAACAGCATCGCCAGCCTTCGCCTCAAGGCCA
AAGAGTTCAGCCTACACCACAGCCAGGTGCCCACAGTGAACTGA

Translation (247 aa):
MDSAAAAFALDPPAPGPGPPPAPGDCAQARKNFSVSHLLDLEEVAAAGRRAAGPVSGPAEAREGAAREPS
GGSSGSEAAPQDGDCPSPGRGTKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEA
RVQVWFQNRRAKFRRNERAMLATRSASLLKSYGQEAAIEQPVAPRPTTMSPDYLSWPASSPYSSVPPYSP
GGSSPATPGVNMANSIASLRLKAKEFSLHHSQVPTVN


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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