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Report for CCDS15427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15427.1 Public Mus musculus 1 Prrx1 23 108 98 CCDS HistoryNCBI Gene:18933Re-query CCDS DB by CCDS ID:15427.1Re-query CCDS DB by GeneID:18933See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027878.13 ENSMUSP00000027878.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027878.13Link to Ensembl Protein Viewer:ENSMUSP00000027878.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027878Re-query CCDS DB by Protein ID:ENSMUSP00000027878
Original member Current member NCBI NM_011127.2 NP_035257.1 Accepted alive Link to Nucleotide Sequence:NM_011127.2Link to Protein Sequence:NP_035257.1Re-query CCDS DB by Nucleotide ID:NM_011127Re-query CCDS DB by Protein ID:NP_035257Link to BLAST:NP_035257.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035257.1 245 P63013 245 100% 0 0

Chromosomal Locations for CCDS 15427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 163248258 163248396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163257761 163257942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163261840 163262015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 163312395 163312635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGACCTCCAGCTACGGGCACGTTCTGGAGCGGCAACCGGCGCTGGGCGGCCGCTTGGACAGCCCGGGCA
AC
CTCGACACCCTGCAGGCGAAAAAGAACTTCTCCGTCAGTCACCTGCTAGACCTGGAGGAGGCCGGGGA
C
ATGGTGGCGGCACAAGCAGACGAAAGTGTGGGCGAGGCGGGCCGGAGCCTGCTGGAGTCACCGGGACTG
ACC
AGTGGCAGCGACACCCCTCAGCAGGACAATGACCAGTTGAACTCTGAGGAGAAGAAGAAGAGAAAGC
AG
CGGAGAAACAGGACAACATTCAACAGCAGCCAACTGCAGGCCTTGGAGCGTGTCTTTGAGCGGACACA
T
TACCCGGATGCTTTTGTTCGAGAAGATCTCGCACGTCGGGTGAACCTCACTGAGGCCAGAGTGCAGGTG
TGG
TTTCAGAACCGAAGAGCCAAGTTCCGCAGGAATGAGCGAGCCATGCTGGCCAATAAAAACGCTTCTC
TC
CTCAAGTCCTACTCAGGAGACGTGACTGCTGTGGAGCAACCCATCGTACCTCGTCCTGCTCCCAGACC
A
ACCGATTATCTCTCCTGGGGGACAGCCTCTCCGTACAGCGCCATGGCTACTTATTCTGCCACATGTGCC
AAC
AATAGCCCTGCACAGGGTATCAACATGGCCAACAGCATTGCCAACCTGAGACTGAAGGCCAAGGAAT
AT
AGTTTACAGAGGAACCAGGTGCCAACAGTCAACTGA


Translation (245 aa):
MTSSYGHVLERQPALGGRLDSPGNLDTLQAKKNFSVSHLLDLEEAGDMVAAQADESVGEAGRSLLESPGL
T
SGSDTPQQD
NDQLNSEEKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQV
W
FQNRRAKFRRNERAMLANKNASLLKSYSGDVTAVEQPIVPRPAPRPTDYLSWGTASPY
SAMATYSATCA
N
NSPAQGINMANSIANLRLKAKEYSLQRNQVPTVN




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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