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Report for CCDS15070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15070.1 Public Mus musculus 1 Dnpep 23 108 98 CCDS HistoryNCBI Gene:13437Re-query CCDS DB by CCDS ID:15070.1Re-query CCDS DB by GeneID:13437See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15070.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066668.13 ENSMUSP00000070821.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066668.13Link to Ensembl Protein Viewer:ENSMUSP00000070821.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000066668Re-query CCDS DB by Protein ID:ENSMUSP00000070821
Original member Current member EBI ENSMUST00000113605.9 ENSMUSP00000109235.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113605.9Link to Ensembl Protein Viewer:ENSMUSP00000109235.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113605Re-query CCDS DB by Protein ID:ENSMUSP00000109235
Original member Current member EBI ENSMUST00000187836.6 ENSMUSP00000139739.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000187836.6Link to Ensembl Protein Viewer:ENSMUSP00000139739.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000187836Re-query CCDS DB by Protein ID:ENSMUSP00000139739
Original member NCBI NM_016878.4 NP_058574.3 Updated not alive Link to Nucleotide Sequence:NM_016878.4Link to Protein Sequence:NP_058574.3Re-query CCDS DB by Nucleotide ID:NM_016878Re-query CCDS DB by Protein ID:NP_058574
Current member NCBI NM_016878.5 NP_058574.3 Accepted alive Link to Nucleotide Sequence:NM_016878.5Link to Protein Sequence:NP_058574.3Re-query CCDS DB by Nucleotide ID:NM_016878Re-query CCDS DB by Protein ID:NP_058574Link to BLAST:NP_058574.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058574.3 473 Q9Z2W0 473 100% 0 0

Chromosomal Locations for CCDS 15070.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 75308659 75308709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75309299 75309466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75311792 75311893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75311992 75312031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75312405 75312565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75313426 75313509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75314364 75314441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75315130 75315237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75315345 75315420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75315619 75315749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75315945 75316070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75316330 75316443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75316541 75316629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 75316710 75316803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCTATGAACGGCAGGGCTCGGAAAGAGGCCATCCAGGCCACAGCCCGAGAGCTCCTGAAGTTCGTGA
ACCGGAGTCCCTCTCCTTTCCACGTCGTGGCTGAGTGCCGCAGCCGCCTCCTCCAGGCTGGCTTCCGTGA
ACTCAAGGAAACAGAGGGCTGGGATATCGTACCAGAAAACAAGTACTTCTTAACCAGAAACTCCTCCTCC
ATCATTGCTTTTGCTGTGGGGGGCCAGTATGTTCCTGGCAATGGCTTCAGCCTCATTGGGGCCCACACGG
ACAGTCCCTGTCTCAGGGTGAAACGCAAATCGCGCCGAAGCCAGGTGGGCTACCACCAGGTCGGTGTTGA
GACCTACGGCGGTGGGATCTGGAGCACATGGTTCGACCGGGACCTGACCTTGGCTGGACGCGTCATTATC
AAGTGCCCTACCTCAGGCCGGCTGGAGCAGAGGCTCGTCCATATAGAACGGCCCATCCTGCGCATCCCAC
ATCTGGCCATCCATCTGCAGCGAAATATCAATGAGAACTTTGGGCCCAACACAGAGATCCACCTAGTCCC
TATTCTTGCCACAGCAGTTCAGGAAGAGCTGGAGAAAGGGACTCCTGAACCAGGGCCTCTCGGTGCCACT
GATGAGCGGCACCACTCGGTCCTCATGTCCCTGCTCTGTACCCATCTGGGCCTGAGTCCTGACAGCATCA
TGGAGATGGAGCTCTGCCTGGCAGACACCCAGCCTGCAGTCCTGGGTGGAGCCTATGAAGAGTTCATCTT
CGCTCCTCGACTGGACAATCTGCACAGCTGCTTCTGTGCCCTGCAGGCATTGATTGATTCCTGTGCATCC
CCTGCCTCTCTGGCCAGGGATCCACATGTGCGCATGGTCACACTCTACGACAATGAAGAGGTGGGGTCAG
AGAGTGCACAAGGAGCACAGTCCCTGCTGACGGAGCTGATACTACGGCGCATCTCAGCCTCACCTCAGCG
TCTGACTGCCTTCGAGGAAGCCATACCTAAGTCCTTCATGATCAGTGCAGACATGGCCCATGCTGTGCAC
CCAAACTACTCGGACAAGCATGAAGAAAACCACCGGCCTTTGTTCCATAAGGGTCCTGTGATCAAGGTGA
ACAGCAAGCAGCGCTACGCCTCTAATGCAGTGTCTGAGTCCATGATTCGAGAGGTGGCTGGCCAAGTTGG
GGTGCCCCTGCAGGACCTCATGGTCAGGAATGACTCCCCGTGTGGTACCACCATTGGACCTATCTTGGCT
TCTCGACTGGGGCTTCGGGTGCTGGACTTAGGCAGCCCCCAACTGGCTATGCACTCTATCCGGGAGACAG
CCTGTACCACTGGAGTTCTCCAGACCCTCACCCTTTTCAAGGGCTTCTTTGAGCTGTTCCCTTCTGTAAG
CCGGAACCTCTTAGTGGACTGA

Translation (473 aa):
MAMNGRARKEAIQATARELLKFVNRSPSPFHVVAECRSRLLQAGFRELKETEGWDIVPENKYFLTRNSSS
IIAFAVGGQYVPGNGFSLIGAHTDSPCLRVKRKSRRSQVGYHQVGVETYGGGIWSTWFDRDLTLAGRVII
KCPTSGRLEQRLVHIERPILRIPHLAIHLQRNINENFGPNTEIHLVPILATAVQEELEKGTPEPGPLGAT
DERHHSVLMSLLCTHLGLSPDSIMEMELCLADTQPAVLGGAYEEFIFAPRLDNLHSCFCALQALIDSCAS
PASLARDPHVRMVTLYDNEEVGSESAQGAQSLLTELILRRISASPQRLTAFEEAIPKSFMISADMAHAVH
PNYSDKHEENHRPLFHKGPVIKVNSKQRYASNAVSESMIREVAGQVGVPLQDLMVRNDSPCGTTIGPILA
SRLGLRVLDLGSPQLAMHSIRETACTTGVLQTLTLFKGFFELFPSVSRNLLVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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