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Report for CCDS14963.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14963.1 Public Mus musculus 1 Mars2 23 108 98 CCDS HistoryNCBI Gene:212679Re-query CCDS DB by CCDS ID:14963.1Re-query CCDS DB by GeneID:212679See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14963.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061334.9 ENSMUSP00000049770.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061334.9Link to Ensembl Protein Viewer:ENSMUSP00000049770.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000061334Re-query CCDS DB by Protein ID:ENSMUSP00000049770
Original member Current member NCBI NM_175439.3 NP_780648.1 Accepted alive Link to Nucleotide Sequence:NM_175439.3Link to Protein Sequence:NP_780648.1Re-query CCDS DB by Nucleotide ID:NM_175439Re-query CCDS DB by Protein ID:NP_780648Link to BLAST:NP_780648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780648.1 586 Q499X9 586 100% 0 0

Chromosomal Locations for CCDS 14963.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 55237240 55239000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGCTGCGGCAGTGTGCTCGCTGGGTGTTGACGCGCACCCGGTTCGGCCGCGGCTGTCGCCGCTACGGTT
CG
TGCTCGCCGAGCGCTAGTGGCGACGCCGGGGAAGCGCGGGCCTACTTCACCACACCTATCTTCTACGT
G
AACGCCGCGCCGCACATCGGGCACCTGTACTCGGCGCTACTGGCCGACGCCCTGTGCCGCCACCGTCGT
CTC
CGAGTTCCCGGCTCTGCGTCCACGCGGTTTTCCACCGGCACGGATGAGCACGGCCTGAAGATCCAGC
AG
GCGGCAGCCACCGCCGGCTTGGCCCCGATCGAGCTGTGCGATCGAGTGTCTGCCCAGTTTTTGCAGCT
T
TTCCGGGAGGCTGACATCTCTTCCACGGACTTCATCCGCACCACGGAGGCTCGGCACCGAGTAGCGGTG
CAG
CATTTCTGGGGTGTGCTGGAGGCCCGGGGTCTGCTTTACAAAGGGATCTATGAAGGGTGGTATTGTG
CC
TCGGATGAGTGCTTCTTGCCGGAGGCCAAGGTTACTCGGCAGGTGGGTCCGTCCGGGGATCCCTGTCC
C
GTGTCTCTCGAGAGCGGACATCCTGTCTCCTGGACGAAGGAAGAAAATTACATTTTCAAGCTTTCTCAG
TTT
CGAGAACCACTCCAGCGGTGGCTTGGAAACAATCCTCAGGCAATCACACCGGAACCGTTCCACCAGG
CA
GTTCTTCAGTGGCTGGAGGAGGAGCTGCCCGACTTGTCCGTTTCTCGAAGGAGTAGCCATCTGCACTG
G
GGCATACCAGTTCCCGGGGACGACTCGCAGACCATCTACGTGTGGCTGGATGCCCTGGTCAACTACCTC
ACT
GTAGTTGGCTACCCAGATGCAGATTTCAAGTCTTGGTGGCCAGCCACCTCTCATATCATAGGTAAGG
AC
ATTCTCAAATTTCATGCTATTTATTGGCCTGCCCTTCTCCTAGGGGCAGGATTGAGGCCACCACATCG
C
ATCTATGTCCACTCGCACTGGACGGTGAGTGGCCAAAAAATGTCCAAAAGCTTGGGCAACGTGGTGGAT
CCC
AGGACTTGCCTTGATCGCTATACTGTGGATGGCTTTCGCTACTTTCTCCTTCGGCAGGGCGTTCCCA
AT
TGGGACTGCGATTACTATGATGAAAAGGTGGTTAAATTGCTGGACTCCGAGCTGGCAGATGCCTTAGG
A
GGGCTTTTAAACCGGTGCACTGCCTACAGAATAAATCCTTCTGGAACCTACCCATCTTTCTGTGCTGCC
TGT
TTCCCCAGTGAGCCAGGGTTAACGGGGCCGTCAGTTCGTGTGCAGGCAGAAGACTATGCGCTTGTAA
CT
GCAGTGGCCACTTTACCCAAACTGGTAGCGGGCTATTATAATGACTTTCAGATCTATAAGGCTCTGGA
G
GCGGTATCCAGCTGTGTTCGGCAAACTAATGGTTTCGTCCAAAGGCACGCACCATGGAAATTGAACTGG
GAG
AGCCCTGAGGATGCTCCCTGGCTGGGTACCGTGCTTCACGTAGCCTTGGAGTGCTTGCGAGTGTTTG
GA
ACTTTGCTTCAGCCTGTTACTCCAAACTTAGCAGATAAACTGCTGTCAAGACTGGGAGTCTCTACCAC
A
GAGAGAGGCCTTGGAGAGCTCTACTTCCTACCTCGATTCTATGGACACCCATGCCCCTTTGAGGGGAGA
AAG
TTGGGACCTGACACTGGGCTTTTGTTTCCTAGACTGGACCAATCTAGGACTCGGCTAGTGAAAGCCC
AC
AGGACCTAG


Translation (586 aa):
MLRQCARWVLTRTRFGRGCRRYGSCSPSASGDAGEARAYFTTPIFYVNAAPHIGHLYSALLADALCRHRR
L
RVPGSASTRFSTGTDEHGLKIQQAAATAGLAPIELCDRVSAQFLQLFREADISSTDFIRTTEARHRVAV
Q
HFWGVLEARGLLYKGIYEGWYCASDECFLPEAKVTRQVGPSGDPCPVSLESGHPVSWTKEENYIFKLSQ
F
REPLQRWLGNNPQAITPEPFHQAVLQWLEEELPDLSVSRRSSHLHWGIPVPGDDSQTIYVWLDALVNYL
T
VVGYPDADFKSWWPATSHIIGKDILKFHAIYWPALLLGAGLRPPHRIYVHSHWTVSGQKMSKSLGNVVD
P
RTCLDRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLDSELADALGGLLNRCTAYRINPSGTYPSFCAA
C
FPSEPGLTGPSVRVQAEDYALVTAVATLPKLVAGYYNDFQIYKALEAVSSCVRQTNGFVQRHAPWKLNW
E
SPEDAPWLGTVLHVALECLRVFGTLLQPVTPNLADKLLSRLGVSTTERGLGELYFLPRFYGHPCPFEGR
K
LGPDTGLLFPRLDQSRTRLVKAHRT




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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