NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14921.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14921.1 Public Mus musculus 1 AI597479 23 108 98 CCDS HistoryNCBI Gene:98404Re-query CCDS DB by CCDS ID:14921.1Re-query CCDS DB by GeneID:98404See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 14921.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000010434.7 ENSMUSP00000010434.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000010434.7Link to Ensembl Protein Viewer:ENSMUSP00000010434.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000010434Re-query CCDS DB by Protein ID:ENSMUSP00000010434
Original member Current member NCBI NM_133818.1 NP_598579.1 Accepted alive Link to Nucleotide Sequence:NM_133818.1Link to Protein Sequence:NP_598579.1Re-query CCDS DB by Nucleotide ID:NM_133818Re-query CCDS DB by Protein ID:NP_598579Link to BLAST:NP_598579.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598579.1 232 Q922M7 232 100% 0 0

Chromosomal Locations for CCDS 14921.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43098764 43098862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43100715 43100881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43110998 43111373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43113186 43113242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (699 nt):
ATGGCGGGGGATGTGGGCGGTCGCAGCTGTACGGACGCGGAGCTGCTGCTGCACCCTGAGCTGCTATCCC
AGGAGTTCCTCCTCCTCACCCTGGAGCAGAAGAACATAGCAGTTGAAAATGAAGTAAGGGTAAACAAAGA
CAACCTTACCGACCTTTACGTCCAGCATGCCATACCGTTGCCTCAGAGGGATTTGCCAAAGAATAGATGG
GGGAAGATGATGGAGAAGAAAAGAGAGCATCATGAAGTGAAAAATGACACCAAAAGGAGTAGTGCTGTAG
ATGGATTAAGGAAAAGGCCCCTCATTGTGTTCGATGGGAGCTCAACCAGCACAAGCATCAAAGTGAAAAG
GACGGAGAACGGAGCAGACGACCGGCTCAAGCCTCTTGCCCAGATAGGCTCCACCAGTGATGCCTTCTGG
AAATCACCAAATTCCTCGTCGAGGATTTCACCCCTAGTGTTGTTTTCCAATTTGCCTGTGAACCATAAAA
TGGAGCACAATAATAATGACACTCAACAGAACCATGACTTAATGAATAGGAAAAGTCCTTCGGGTCCAGT
GAAGTCACCACCTCTGTCCCCTGTTGGAACTACTCCTGTGAAATTAAAGCGGGCTGCTCCTAAGGAAGAG
GCAGAGGCCACAAATCACCTGAAGCCTCCAGAGGTGAAGAGGAAGATACAGCATGTTACATGGCCGTGA

Translation (232 aa):
MAGDVGGRSCTDAELLLHPELLSQEFLLLTLEQKNIAVENEVRVNKDNLTDLYVQHAIPLPQRDLPKNRW
GKMMEKKREHHEVKNDTKRSSAVDGLRKRPLIVFDGSSTSTSIKVKRTENGADDRLKPLAQIGSTSDAFW
KSPNSSSRISPLVLFSNLPVNHKMEHNNNDTQQNHDLMNRKSPSGPVKSPPLSPVGTTPVKLKRAAPKEE
AEATNHLKPPEVKRKIQHVTWP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH