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Report for CCDS28981.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28981.1 Public Mus musculus 17 Cebpz 23 108 98 CCDS HistoryNCBI Gene:12607Re-query CCDS DB by CCDS ID:28981.1Re-query CCDS DB by GeneID:12607See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28981.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024885.9 ENSMUSP00000024885.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024885.9Link to Ensembl Protein Viewer:ENSMUSP00000024885.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000024885Re-query CCDS DB by Protein ID:ENSMUSP00000024885
Original member Current member NCBI NM_001024806.2 NP_001019977.1 Accepted alive Link to Nucleotide Sequence:NM_001024806.2Link to Protein Sequence:NP_001019977.1Re-query CCDS DB by Nucleotide ID:NM_001024806Re-query CCDS DB by Protein ID:NP_001019977Link to BLAST:NP_001019977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019977.1 1052 P53569-1 1052 99.3346% 0 7

Chromosomal Locations for CCDS 28981.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 78919881 78920017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78920549 78920630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78920722 78920780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78921635 78921721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78922130 78922314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78922514 78922571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78923236 78923336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78924446 78924512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78925914 78925982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78926083 78926185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78926869 78926922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78929278 78929366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78931310 78931496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78932110 78932341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78934575 78936067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 78936875 78937030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3159 nt):
ATGTCGGCCGACCAGGAACCTGTGGCGTTCCTTGCCAAGCAGCCCTGGCGTCCCAAACAGGTGACAGAAG
ATCCGGATGAGGAAGACGAGGAGGATGGCGATGAGGGCAAGAATGGCTTCTCCCTGGAGGAGGTGTTACG
CCTCGGAGGCACAAAGCAAGATTACCTTATGCTGGCTACTTTGGATGAAAATGAGGAAGTGGTGGATGGG
GGCAAAAAGGGAACCATTGACGACCTTCAACAAGGTGAACTGGAGTCATTTATTCAGAATCTGAATTTGG
CCAAATACTCAAAGTCTTTGATTGAAGAAGATGAACCAGAGAAAAAGGAAAACACCAGCAAAAAAGAAGC
AAAACTACTGAAGGTGGAGAATAAAAAACAAAAAGCAACAGAAGGAAAAAAGACATCGGAAAAGAAGGTG
AAAAATAAGACTGTACCAGAACAGCGTCCTGAGAGCTGTCCCGTCTCCAAAGCAAAGAAAGATAAACAAC
CCGATGTGTTTGAATTTCTAGAGAGACAAACAATGTTACTCAGGCCTGGAGGCAAGTGGTACGACATGGA
GTACAGCGGTGAGTATTCCTTGGAGCTGCAGCCTCCAGATGTCGTGTCCAAGTACAAAGCCCTGGCCCAG
AAGCTGTATGAGCACGAAGTCAGCTTATTCAAGAGTAAGACAAACAATCAAAAGGGAGGCTCTTCCACCT
GGATGAAGGCCATCGTGTCATCAGGGACACTAGCTGACAGGATGGCGGCCATGATCCTTCTAATCCAGGA
TGATGCTGTCCACACTCTGCAGTTTGTAGAAACCCTGATGAGCCTTGTGAAAAAGAAGGGCAGCAAGCAG
CAGTGCCTCATGGCGTTGGACACGTTCAAGGAGTTGCTCATCACAGACCTTCTGCCAGACAGTCGGAAGC
TCCGGGTTTTCAGCCAGCATCCTTTCCACAAACTGGAAGAGTTGTCCAGTGGCAACAAGGACTCGAGAGA
TAGAAGACTGATACTGTGGTATTATGAACACCAATTGAAACACTTGGTAGCAGAATTCGTCCAGGTCCTC
GAGACTTTAAGTCATGATTCCTTGGTAACCACTAAAACGCGGGCCCTGGTAGCTGCCCATGAGCTGCTCT
GTGATAAACCCGAGGAGGAAAAGGCTCTTCTTGTGCAGGTGATAAATAAGCTGGGAGATCCTCAGAACAG
AATTGCTACGAAAGCCTCCCATCTGTTAGAAGTGTTACTTCGGAAGCATCCCAATATGAAAGGAGTTGTG
TGTGCAGAAATAGAAAGGCTACTCTTCCGCTCAAATATCAGCCCCAAAGCTCAGTATTATGCAATTTGCT
TTCTAAACCAAATGGTCCTCTCCCATGAAGAAAGTGAGTTGGCTAACAAATTAATTACTCTTTATTTTTG
TTTCTTTCGGACTTGTATCAAGAAAAAAGACATTGAATCAAAAATGCTCAGTGCGATTTTAACAGGGGTG
AACAGAGCATACCCTTACTCCCAGATAGGTGACGACAAAGTGAGGGAGCAGGTGGACACTTTATTCAAAG
TGTTGCATGTTGTAAATTTTAATACGAGTGTGCAGGCTTTAATGCTACTTTTCCAAGTAATGAATTCTCA
ACAGACAATATCTGACCGATATTACACAGCTTTATACAGAAAGATGTTGGATCCAGGCCTGACGACATGT
TCCAAGCAAGCGATGTTTCTCAACCTGATCTACAAATCTTTGAAAGCTGACATCATGCTGCGCCGGGTGA
AGGCGTTTGTGAAGAGGTTGCTTCAGGTCACCTGCACACAGATGCCGCCATTCATTTGTGGAGCGTTGTA
TCTTGTGTCTGAGATCCTTAAAGCAAAACCAGATTTAAGAAGCCAACTAGATGATCATCCGGAGTCTGAC
GAAGAAAACTTCGTTGACGTGGGAGATGACAGTGACGATGAAAAGTTTACCGATGCAGACAAAGAAACAG
CAACAGATGCAGTAAAGGAAGTAGAGTCAAAGGAGACAGAGCCTGAGAGCAGCGCAGAGGCCGAGAAGCC
GAAGGCCGCTTCCTGGGTGCACTTTGACAACTTGAAAGGTGGCAAGCAAATAAAGACATATGATCCATTC
AGTAGAAATCCTTTATTCTGCGGAGCTGAAAATACAACTCTTTGGGAGCTCAAAAAGCTATCTGAACATT
TCCATCCTTCTGTGGCCCTTTTTGCAAAGACTATCCTTGAGGGAAATTGTATTCAATACTCAGGGGACCC
ACTGCAGGATTTCACACTCATGAGATTCTTGGATCGATTTGTGTACCGAAATCCAAAGCTACATAAAGGC
AAAGAAAATACCGACAGTGTTGTGATGCAACCCAAAAGGAAGCACTTTATGAAGAATGTCAGAGATCTCG
CTGTGAACAGCAAGGAGTTCCTTGCAAAAGAAGAAAGCCAGATCCCAGTGGATGAAGTGTTCTTCTATAG
GTATTACAAAAAAGTTGCTGTTGTTAAAGACAAACAGAAACGCAGTGCAGATGAAGAAAGTATAGAAGAT
ATTGATGATGAAGAATTTGAAAATATGATTGACACATTTGAAGACGACAACTGCTTCCCACCTGGGAAGG
ATGATATTGATTTTGCCAGCAATATGAAAAAAGCAAAAGGAGCTAAGGCTGACTTGGAAGACTCAGAGAG
TAGTGACGGCGAACTTGGAGACCTGGATGACGATGAAGTTTCTCTCGGAAGTATGAACGATGAAGACTTT
GAGATTGATGAAGATGGAGGAACGTTCATGGATGTGTCAGATGATGAAAGTGAAGATGCTCCAGAATTTG
CTGACGCCAACCCCAAAGCCAATACTAAGAAAAGCAAGAGAAAGAGTGAAGATGATTTTGACTTTGCTGG
GTCATTTCAAGGACAAAAGAAAAAGAAGAAAAGTTTCAATGACTCCAGCCTGTTTGTCTCTGCTGAGGAG
TTTGGCCATCTGCTGGATGAGAATATGGGCTCCAAGTTTGATACTATTGGCATGAACGCCATGGCTAACA
GAGATAATGCAAGTTTCAAACAGCTCAAGTGGGAAGCTGAGCGAGATGACTGGCTGCACAACAGAGATGT
GAAAAGTATCATCAAGAAAAAGAAAAATTTCAGGAAGAAGATGAAAGCCCCTCAGAAACCCAAACGGCAG
AGGAAGTGA

Translation (1052 aa):
MSADQEPVAFLAKQPWRPKQVTEDPDEEDEEDGDEGKNGFSLEEVLRLGGTKQDYLMLATLDENEEVVDG
GKKGTIDDLQQGELESFIQNLNLAKYSKSLIEEDEPEKKENTSKKEAKLLKVENKKQKATEGKKTSEKKV
KNKTVPEQRPESCPVSKAKKDKQPDVFEFLERQTMLLRPGGKWYDMEYSGEYSLELQPPDVVSKYKALAQ
KLYEHEVSLFKSKTNNQKGGSSTWMKAIVSSGTLADRMAAMILLIQDDAVHTLQFVETLMSLVKKKGSKQ
QCLMALDTFKELLITDLLPDSRKLRVFSQHPFHKLEELSSGNKDSRDRRLILWYYEHQLKHLVAEFVQVL
ETLSHDSLVTTKTRALVAAHELLCDKPEEEKALLVQVINKLGDPQNRIATKASHLLEVLLRKHPNMKGVV
CAEIERLLFRSNISPKAQYYAICFLNQMVLSHEESELANKLITLYFCFFRTCIKKKDIESKMLSAILTGV
NRAYPYSQIGDDKVREQVDTLFKVLHVVNFNTSVQALMLLFQVMNSQQTISDRYYTALYRKMLDPGLTTC
SKQAMFLNLIYKSLKADIMLRRVKAFVKRLLQVTCTQMPPFICGALYLVSEILKAKPDLRSQLDDHPESD
EENFVDVGDDSDDEKFTDADKETATDAVKEVESKETEPESSAEAEKPKAASWVHFDNLKGGKQIKTYDPF
SRNPLFCGAENTTLWELKKLSEHFHPSVALFAKTILEGNCIQYSGDPLQDFTLMRFLDRFVYRNPKLHKG
KENTDSVVMQPKRKHFMKNVRDLAVNSKEFLAKEESQIPVDEVFFYRYYKKVAVVKDKQKRSADEESIED
IDDEEFENMIDTFEDDNCFPPGKDDIDFASNMKKAKGAKADLEDSESSDGELGDLDDDEVSLGSMNDEDF
EIDEDGGTFMDVSDDESEDAPEFADANPKANTKKSKRKSEDDFDFAGSFQGQKKKKKSFNDSSLFVSAEE
FGHLLDENMGSKFDTIGMNAMANRDNASFKQLKWEAERDDWLHNRDVKSIIKKKKNFRKKMKAPQKPKRQ
RK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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