NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS79848.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79848.1 Public Mus musculus 2 Dnaaf9 23 108 98 CCDS HistoryNCBI Gene:228602Re-query CCDS DB by CCDS ID:79848.1Re-query CCDS DB by GeneID:228602See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79848.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119422.7 ENSMUSP00000113481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119422.7Link to Ensembl Protein Viewer:ENSMUSP00000113481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119422Re-query CCDS DB by Protein ID:ENSMUSP00000113481
Original member Current member NCBI NM_001311147.1 NP_001298076.1 Accepted alive Link to Nucleotide Sequence:NM_001311147.1Link to Protein Sequence:NP_001298076.1Re-query CCDS DB by Nucleotide ID:NM_001311147Re-query CCDS DB by Protein ID:NP_001298076Link to BLAST:NP_001298076.1

Chromosomal Locations for CCDS 79848.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130709200 130709318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130709938 130710031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130710812 130710877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130712260 130712462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130712952 130713026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130713397 130713503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130717261 130717347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130719840 130719975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130727148 130727185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130730789 130730914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130736467 130736625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130737379 130737467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130738981 130739098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130739371 130739469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130740401 130740489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130741817 130741963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130748685 130748788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130764453 130764540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130765688 130765738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130767610 130767680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130770672 130770789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130775059 130775104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130775727 130775771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130777205 130777281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130778417 130778504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130784424 130784460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130785459 130785540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130791852 130791987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130793989 130794044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130798167 130798265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130806871 130806948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130810822 130810928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130812845 130812941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130814179 130814193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3147 nt):
ATGACGGAAAATGAGTATGAAGATGAGGAAGCAGCAGAAGAATTTAAGATTTCCAGCTTTGTGGACATGG
TTCGAGACTGTAGTAGGATTGGTATTCCTTATAGCTCCCAAGGTCACTTACAGATATTTGATATGTTTGT
GGTAGAGAAGTGGCCAATTGTCCAGGCCTTTGCACTTGAAGGCATTGGAGGAGATGGATTTTTTACCATG
AAATATGAGTTGCAGGACGTGAGTCTGAGTCTGTGGAATGTCTACAGCAGGATGGACCCTGCGTCTCTGG
AGAACATGCTTTCAGAAGACCTGGCGGTGTTTGAGCATCAGTGGACGAGCTTCTTTGCTAACTTTGATAC
AGAAATCCCTTTCCTGCTGGAACTTTCTGAATCTCAGGCGGGTGAGCCATTCAGAAGCTACTTCGGTCAT
GGAATGCTCTCCAGCCATATTACTGAAAACAGCCCTCATCGGCAGCCTTTTGTTCTCTTTGGCAACCACT
CCACACGGGACAACCTGAGCGCTGGCAGCTTTAACTTCCCTTCTGAAGGGCACCTGGTGCGCAACACTGG
TCCTGCAGGGAGCTTTGCCAAACACATGGTCGCTCAGTGTGTCTCACCAAAGGGACCTCTGGCCTGTTCA
AGAACATACTTTTTTGGAGCTACTCATGTTCCTTATTTGGGTGACAACGAGAAGCTGCCCAGGACCACGG
AGCAAATTAGGCTCTTATCCCAGATATATGCTGCTGTTATTGAGGCTGTTTTGGCTGGCATTGCATGTTA
TGCTAAAACTTGCAGTCTGGCAAAGGCCAAGGAAGTAGCAGAGCACACTCTGGAGTCTGGGTTAGTGTTC
ACTGAGTTGGTTCCATTCAAAGCAGATCTACGCTCCAAGGTGACTTTTCATATACATGCTGTGAATAACC
AGGGAAGAATTGTGCCTCTGAATAATGAAGATAGCTTATCCTTTGTGAAAACGGCTCGTATGACCGTCTA
TGACATTCCTGACCTGCTGGGAGGAGGAGGAGGAGGATGCTTAGGGTCTGTGGTCTTCTCAGAGTCGTTT
TTGACATCTCGGATCTTGGTTAAAGAAAAAGATGGCACTATTACCCCAGAGACCAGCTACATCATCCTGA
CAGCTGCCATCCCCAGATTCTGTTCCTGGCTGGTAGAAGATAGTGAAATAAAATTGTCTGAGAAAACCCT
GCAAGCAACAAAGGGGGACGACTGTTGCTTGGGCACTTTGCTAACAGGAGGAAAGGGAGCGTATCTTTAT
TCCAACAGTCCACAGTCCGGGCCTGAGGAAGGGAGTGCGTATTTCTTCTCTGGTGGCCTTCTCTTTTCTC
ACCGTCATCACGGAAGTATCGTCATTGCCAAGGAGCATGTGGATGCTTTCTCCTTCTATGATGGGGACTC
CACCAGCGTAGTGGCCGCCCTTCTCATACACTTCCGAAGCTCCATACTTCCTCATCTCCCAGTTCACTTC
CACGGATCAAGCAACTTCCTGATGCTTGCCCTTTTCCCCAAATCAAAGATATATCAAGCATTTTACTCAG
AGGTCTTCTCTCCCTGGCAACAGCAGGATAACTCAGGGCTTTCTTTAAAAGTGATCCAGGAGGATGGATT
ATCTGCGGAACAAAAGAGATTGCACTCCAATGCACAGAAGCTCTTCAGTGCGCTGAGCCCTCCTGCCCAG
GACTGGAGCTCCCCAAAACTGCTCTCAGGCAAACTTCCTGAGCTGGACCGGTTTCTCCAGCATTTTGCCA
TCGGCAGCATTGGTCAGGAGCCTGTGATGCGAGCCCATCTTGTGGGCCTGCTGCAGCAACCTGAGATGAG
CCCTGCTCACGAAGTAGAGAGTGACAAGGTTGTCATCAGCATTGTAACTGGTCTCCCAGGCTGTCATGCC
AGCAAGCTCTGTGCTTTCCTGATCACTCTGCATAAGGAGTATGGCAGATGGATGGTATACCGGCAAATCA
TGGACAGCTCTGAATGTTTCCATGCTGCCCACTTCCAAAAATACCTTTCCAGTGCCCTGGAGGCCCAACA
GAACCGTTCTGCCCGCCAGTCAGCTTACATCCGCAAGAAGACCAGGCTGCTGGTGGTACTACAAGGCTAC
ACAGACGTCATTGATGTTGTGCAAGCCCTGCAGACTCACCCAGACCCAAACGTCAGGTCCTACTTCACCA
TTGGTGCCGTCACGGTGTGTGTGGAGCCCTTGAGCTGCTACATGGAGCACAGATTTCTCTTTCCTAAATG
TCTTGACCAGTGTTCACAAGGTGTGGTGAGTAACGTGGTGTTTACCAGTCACACAGCAGAGCAGAAGCAC
CCTCTCCTTGTTCAGCTGCAGACCCTCATCAGGGCTTCCAATCCTACCGCAGCCTTCATTCTTGCCGAAA
ATGGGATTGTCACAAGGAATGAAGACATTGAGCTGATTCTCTCAGAAAATAGTTTTTCGAGTCCCCAGAT
GCTACGTTCTCGATACTTACTGTTCCCTGGCTGGTATGAAGGTAAATTTGATGCTGGATCCGTCTTTCCG
CTAATGGTTCAGATCTGTGTGTGGTTTGACTGTCCCCTGGAGAAAACCCGCTTTGTGAGCAGGTGCAGAG
CAATTCAGTCTTCCATCAAGCCCAGTCCCTTCTCTGGAAACATCTACCACATCCTTGGCAAAGTGAAATT
TTCAGATTCTGAAAAGACCATGGAGGTTTGCCACAATACTTTAACCAACTCCCTGACCATTGTGCCAGTT
TTGGAGGGACCCACACCACCTCCCAACTCAAGAAGCAGCCCCCAAGACAACGGGCAGCCAGAATGCTACC
TTGTGTTCATTGGCTGCTCCCTGAAGGAGGACAGCCTCAAAGACTGGCTTCGACAGTCAGCTAAGCAGAG
GCCTCAGAGGAAAGCTCTGAAAACCAGGGGCATGCTGACCCAGCAAGAGATCAAGAACATCCATGTGAAA
CGCCACTTGGACCCCTTACCTGCAGGCTATTTTTACAATGGCACCCAGTTTGTTAACTTCTTTGGGGACA
AGACTGATTTTCACCCACTCATGGACCAGTTCATGAATGATTATGTGGAAGAGGCCAATCGGGAGATCGA
GAGGTACAACCGGGAGCTGGAGCAGCAGGAATACCGGGACCTCTTTGAGCAGAAGCCGAAGCCCTAG

Translation (1048 aa):
MTENEYEDEEAAEEFKISSFVDMVRDCSRIGIPYSSQGHLQIFDMFVVEKWPIVQAFALEGIGGDGFFTM
KYELQDVSLSLWNVYSRMDPASLENMLSEDLAVFEHQWTSFFANFDTEIPFLLELSESQAGEPFRSYFGH
GMLSSHITENSPHRQPFVLFGNHSTRDNLSAGSFNFPSEGHLVRNTGPAGSFAKHMVAQCVSPKGPLACS
RTYFFGATHVPYLGDNEKLPRTTEQIRLLSQIYAAVIEAVLAGIACYAKTCSLAKAKEVAEHTLESGLVF
TELVPFKADLRSKVTFHIHAVNNQGRIVPLNNEDSLSFVKTARMTVYDIPDLLGGGGGGCLGSVVFSESF
LTSRILVKEKDGTITPETSYIILTAAIPRFCSWLVEDSEIKLSEKTLQATKGDDCCLGTLLTGGKGAYLY
SNSPQSGPEEGSAYFFSGGLLFSHRHHGSIVIAKEHVDAFSFYDGDSTSVVAALLIHFRSSILPHLPVHF
HGSSNFLMLALFPKSKIYQAFYSEVFSPWQQQDNSGLSLKVIQEDGLSAEQKRLHSNAQKLFSALSPPAQ
DWSSPKLLSGKLPELDRFLQHFAIGSIGQEPVMRAHLVGLLQQPEMSPAHEVESDKVVISIVTGLPGCHA
SKLCAFLITLHKEYGRWMVYRQIMDSSECFHAAHFQKYLSSALEAQQNRSARQSAYIRKKTRLLVVLQGY
TDVIDVVQALQTHPDPNVRSYFTIGAVTVCVEPLSCYMEHRFLFPKCLDQCSQGVVSNVVFTSHTAEQKH
PLLVQLQTLIRASNPTAAFILAENGIVTRNEDIELILSENSFSSPQMLRSRYLLFPGWYEGKFDAGSVFP
LMVQICVWFDCPLEKTRFVSRCRAIQSSIKPSPFSGNIYHILGKVKFSDSEKTMEVCHNTLTNSLTIVPV
LEGPTPPPNSRSSPQDNGQPECYLVFIGCSLKEDSLKDWLRQSAKQRPQRKALKTRGMLTQQEIKNIHVK
RHLDPLPAGYFYNGTQFVNFFGDKTDFHPLMDQFMNDYVEEANREIERYNRELEQQEYRDLFEQKPKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH