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Report for CCDS37722.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37722.1 Public Mus musculus 18 Arhgap12 23 108 98 CCDS HistoryNCBI Gene:75415Re-query CCDS DB by CCDS ID:37722.1Re-query CCDS DB by GeneID:75415See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37722.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077128.12 ENSMUSP00000076376.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077128.12Link to Ensembl Protein Viewer:ENSMUSP00000076376.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077128Re-query CCDS DB by Protein ID:ENSMUSP00000076376
Original member Current member NCBI NM_029277.2 NP_083553.2 Accepted alive Link to Nucleotide Sequence:NM_029277.2Link to Protein Sequence:NP_083553.2Re-query CCDS DB by Nucleotide ID:NM_029277Re-query CCDS DB by Protein ID:NP_083553Link to BLAST:NP_083553.2

Chromosomal Locations for CCDS 37722.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 6026556 6026730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6027575 6027677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6027960 6028094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6028194 6028271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6031730 6031828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6033141 6033257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6034450 6034552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6037018 6037116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6039354 6039455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6049277 6049358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6052862 6052923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6061847 6061972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6064341 6064421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6065705 6065845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6069831 6070091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6111685 6112362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGGCCGAGAGAAGTGGAAAGATCACTGCAGGACAAGCGTATATTGAGGTGGAGTATGATTATGAGTATG
ACGCAAAGGACAGAAAGATTGTGATCAGACAAGGGGAGCGCTACCTCCTGGTGAAGAAGACCAATGATGA
CTGGTGGCAAGTCAGACCTGATGAGAACTCAAAAGCATTTTATGTGCCAGCACAGTATGTCAAGGAGGTC
ACTCGCAAAGCTCTGATGCCACCTGTGAAGCAGGCAACAGGACTGCCAAATAACTCTATGAAGACAATAC
AGAGTATGCATCTCCAGAGATCGACAGAAAATGTGAACAAAATGCCTGAGCTTTCAAGTTTTGGAAAGCC
ATCGTCATCTGTTCAAGGAACAGGTCTTATTCGTGATGCCAATCAGAATTTCGGATCCAATTATAATTCA
GGCCAGACTCTCAACCTAAGCCTGGACCTGACCCATAATAATGGAAAGTTTAACAGTGACTCACATTCTC
CTAAAGTTTCCAGCCAGAATAGGACACGCTTATTTGGTCATTTTCCCGGGCCAGAGTTCTTGGACATAGA
GAAAACTAGCTTCTCTCAGGAACAGTCATGTGACTCAGCTGGAGAAGGCTCCGAAAGAATACAGCAGGAT
TCCGAGTCTGGAGATGAACTTAGCAGCAGCTCCACTGAGCAGATGAGGGCAACCACACCCCCTAATCAAG
GAAGGCCAGATTCTCCAGTCTATGCTAACCTACAGGAACTGAAAATATCACAGTCTGCTCTTCCTCCTCT
TCCTGGGAGCCCAGCAATTCAAGTTAATGGGGAATGGGAGACTCACAAAGACAGTTCAGGCCGTTGTTAC
TACTATAACCGCACAACCCAGGAGCGAACCTGGAAACCACCTCGATGGGCTCGAGATGTGAGCACAAGCC
GAGATTTTCAGAGCCCAGGAGAGCAAGAGCCTCTTTCATCAGAAGAAAACTACCACAGCAGTTGTTTCAG
CCAGTCAGATAGTCAGTGTGGCTCTCCTCCCAGGGGTTGGTCAGAAGAGCTGGATGAACGTGGGCATACC
TTGTATACCAGTGACTATACTAAGGAAAAGTGGCTCAAGCATGTTGATGATCAAGGTAGACAGTATTACT
ACAGCGCAGATGGATCTCGGTCAGAGTGGGAATTGCCAAAGTATAATGCTTCATCTCAGCAGCAAAGAGA
AATAATTAAAAGTAGGAGCTTGGACAGGCGGCTGCAAGAACCAATAGTGTTAACTAAATGGAGACATAGC
ACCATTGTGTTGGACTCCAACGACAAGGGTCAGGAGAAATATGGACTGTTAAATGTAACAAAAATTACTG
AAAATGGGAAAAAAGTTCGAAAGAACTGGTTGTCTTCTTGGGCAGTGCTGCAGGGTTCGTCTTTACTTTT
TACGAAAACTCAAGGAAGTAGTACAAGCTGGTTTGGGAGTAATCAGTCCAAACCAGAATTCACAGTGGAC
CTGAAGGGGGCAGTGATTGAAATGGCATCAAAGGACAAATCGAGCAAGAAGAATGTATTTGAGCTGAAAA
CTCGACAAGGAACAGAACTGCTAATTCAGTCTGATAATGATGCTGTTATTAATGATTGGTTTAAAGTTCT
TAGTAGTACTATCAATAACCAGGTAGCAGAGGCCGATGAAGCAGCTGAAGAGGAAACACCAGATTCACCA
GGGGTAGAAAAGCATGATAAAGAAAAGGACCAGAAGGAGCTTAAAAAACTTCGCTCAATGAAAGGATCCA
GCATGGATTCTTCAGAGCAGAAGAAAACTAAGAAAAACTTAAAGAAGTTTCTTACCCGGCGCCCCACTTT
GCAAGCTGTTCGTGAGAAAGGTTATATCAAAGATCAAGTATTTGGATCTAATCTTGCTAATCTGTGTCAG
AGGGAGAATGGGACAGTGCCAAAGTTTGTGAAGTTATGCATTGAGCATGTCGAAGAGCATGGTTTAGATG
TTGATGGTATTTACAGAGTGAGTGGCAACCTTGCCGTGATCCAGAAGCTGAGGTTCGCAGTCAATCATGA
TGAGAAGTTGGACTTGAATGACAGTAAATGGGAAGACATTCATGTCATCACGGGAGCACTCAAAATGTTT
TTTCGAGAACTACCAGAACCTCTTTTTACGTTTAATCATTTCAATGATTTTGTTAATGCAATTAAACAAG
AACCGAGACAGCGTGTCACTGCAGTTAAGGACCTAATCAGACAGTTGCCAAAGCCAAATCAAGATACAAT
GCAGATTCTGTTTAGACATCTCAAAAGGGTTATAGAAAATGGAGAAAAAAACCGAATGACCTATCAGAGC
ATAGCGATTGTTTTTGGCCCCACCCTTCTAAAGCCAGAAAGAGAGACTGGTAATATAGCAGTTCATACTG
TGTACCAGAACCAGATTGTAGAGCTGATTCTCCTGGAATTAAGCACTGTCTTTGGACGTTGA

Translation (813 aa):
MAERSGKITAGQAYIEVEYDYEYDAKDRKIVIRQGERYLLVKKTNDDWWQVRPDENSKAFYVPAQYVKEV
TRKALMPPVKQATGLPNNSMKTIQSMHLQRSTENVNKMPELSSFGKPSSSVQGTGLIRDANQNFGSNYNS
GQTLNLSLDLTHNNGKFNSDSHSPKVSSQNRTRLFGHFPGPEFLDIEKTSFSQEQSCDSAGEGSERIQQD
SESGDELSSSSTEQMRATTPPNQGRPDSPVYANLQELKISQSALPPLPGSPAIQVNGEWETHKDSSGRCY
YYNRTTQERTWKPPRWARDVSTSRDFQSPGEQEPLSSEENYHSSCFSQSDSQCGSPPRGWSEELDERGHT
LYTSDYTKEKWLKHVDDQGRQYYYSADGSRSEWELPKYNASSQQQREIIKSRSLDRRLQEPIVLTKWRHS
TIVLDSNDKGQEKYGLLNVTKITENGKKVRKNWLSSWAVLQGSSLLFTKTQGSSTSWFGSNQSKPEFTVD
LKGAVIEMASKDKSSKKNVFELKTRQGTELLIQSDNDAVINDWFKVLSSTINNQVAEADEAAEEETPDSP
GVEKHDKEKDQKELKKLRSMKGSSMDSSEQKKTKKNLKKFLTRRPTLQAVREKGYIKDQVFGSNLANLCQ
RENGTVPKFVKLCIEHVEEHGLDVDGIYRVSGNLAVIQKLRFAVNHDEKLDLNDSKWEDIHVITGALKMF
FRELPEPLFTFNHFNDFVNAIKQEPRQRVTAVKDLIRQLPKPNQDTMQILFRHLKRVIENGEKNRMTYQS
IAIVFGPTLLKPERETGNIAVHTVYQNQIVELILLELSTVFGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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