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Report for CCDS17913.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17913.1 Public Mus musculus 3 Ptgfr 23 108 98 CCDS HistoryNCBI Gene:19220Re-query CCDS DB by CCDS ID:17913.1Re-query CCDS DB by GeneID:19220See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17913.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029670.6 ENSMUSP00000029670.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029670.6Link to Ensembl Protein Viewer:ENSMUSP00000029670.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029670Re-query CCDS DB by Protein ID:ENSMUSP00000029670
Original member Current member EBI ENSMUST00000106126.1 ENSMUSP00000101732.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106126.1Link to Ensembl Protein Viewer:ENSMUSP00000101732.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106126Re-query CCDS DB by Protein ID:ENSMUSP00000101732
Original member Current member NCBI NM_008966.3 NP_032992.1 Accepted alive Link to Nucleotide Sequence:NM_008966.3Link to Protein Sequence:NP_032992.1Re-query CCDS DB by Nucleotide ID:NM_008966Re-query CCDS DB by Protein ID:NP_032992Link to BLAST:NP_032992.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032992.1 366 P43117 366 100% 0 0

Chromosomal Locations for CCDS 17913.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 151801624 151801926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 151835072 151835869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGTCTATGAACAGTTCCAAGCAGCCAGTGTCTCCTGCAGCTGGACTCATCGCAAACACAACCTGCCAGA
CGGAGAACCGGCTTTCAGTATTTTTTTCTATCATCTTCATGACAGTGGGGATCTTATCGAACAGCCTGGC
CATCGCCATTCTCATGAAGGCCTACCAGAGATTTAGACAGAAGTCAAAGGCTTCCTTCCTGCTTTTGGCT
AGTGGCCTGGTGATCACAGACTTCTTTGGCCACCTTATCAACGGAGGCATAGCTGTCTTTGTATATGCTT
CTGATAAAGACTGGATCCGCTTTGATCAGTCAAACATCCTGTGCAGTATTTTTGGAATCTCCATGGTCTT
TTCTGGCTTGTGCCCACTTTTTCTAGGCAGTGCGATGGCCATCGAGAGGTGTATAGGAGTCACCAATCCT
ATATTTCACTCTACGAAGATCACATCTAAACACGTGAAAATGATCCTGAGTGGTGTGTGCATGTTTGCTG
TGTTCGTGGCTGTGCTGCCCATCCTTGGACACCGAGATTATCAAATCCAAGCGTCCAGAACCTGGTGTTT
CTACAACACAGAGCACATCGAAGACTGGGAAGACAGATTTTATCTCCTGTTCTTTTCTTTCCTCGGACTC
TTAGCTCTTGGTGTTTCCTTCTCGTGCAATGCCGTCACGGGAGTCACACTCTTAAGAGTGAAGTTCAGAA
GCCAGCAGCATAGGCAAGGCAGATCTCACCACCTGGAGATGATCATTCAGCTCCTGGCCATAATGTGCGT
CTCCTGCGTCTGCTGGAGTCCCTTTCTGGTAACAATGGCCAACATTGCAATAAATGGAAATAATTCCCCA
GTGACCTGTGAAACGACACTTTTTGCTCTCCGCATGGCAACGTGGAATCAGATCTTAGATCCCTGGGTCT
ATATTCTGCTACGGAAGGCTGTCCTTAGGAACCTGTATAAACTTGCCAGTCGTTGCTGTGGAGTTAACAT
CATCAGCTTGCATATCTGGGAACTCAGCTCCATCAAGAATTCCTTAAAGGTTGCTGCTATTTCTGAGTCA
CCAGCTGCAGAGAAGGAGAGCCAGCAAGCATCGAGTGAAGCTGGACTGTAA

Translation (366 aa):
MSMNSSKQPVSPAAGLIANTTCQTENRLSVFFSIIFMTVGILSNSLAIAILMKAYQRFRQKSKASFLLLA
SGLVITDFFGHLINGGIAVFVYASDKDWIRFDQSNILCSIFGISMVFSGLCPLFLGSAMAIERCIGVTNP
IFHSTKITSKHVKMILSGVCMFAVFVAVLPILGHRDYQIQASRTWCFYNTEHIEDWEDRFYLLFFSFLGL
LALGVSFSCNAVTGVTLLRVKFRSQQHRQGRSHHLEMIIQLLAIMCVSCVCWSPFLVTMANIAINGNNSP
VTCETTLFALRMATWNQILDPWVYILLRKAVLRNLYKLASRCCGVNIISLHIWELSSIKNSLKVAAISES
PAAEKESQQASSEAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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