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Report for CCDS88802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88802.1 Public Mus musculus 15 Triobp 23 108 98 CCDS HistoryNCBI Gene:110253Re-query CCDS DB by CCDS ID:88802.1Re-query CCDS DB by GeneID:110253See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140228.7 ENSMUSP00000155397.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140228.7Link to Ensembl Protein Viewer:ENSMUSP00000155397.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140228Re-query CCDS DB by Protein ID:ENSMUSP00000155397
Original member Current member NCBI NM_001039155.1 NP_001034244.1 Accepted alive Link to Nucleotide Sequence:NM_001039155.1Link to Protein Sequence:NP_001034244.1Re-query CCDS DB by Nucleotide ID:NM_001039155Re-query CCDS DB by Protein ID:NP_001034244Link to BLAST:NP_001034244.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034244.1 980 Q99KW3-5 980 100% 0 0

Chromosomal Locations for CCDS 88802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 78951033 78951055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78957105 78957204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78958227 78958372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78959855 78960074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78960949 78961105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 78966294 78968590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2943 nt):
ATGTCCATGGAGCAAGACACCAGAGCACTGCTGCCCACCCAGGGCACTGCCTGGGCTACAGCCTCTGCCC
CAGTCGCCAGACTCCAGGGTCCCCAGGGAGACTCCCACCAGGCCTGCTCTCAGGAGCCTCACAGCCCTTC
CAGTGCTGAGGCACCCTACTGCGACCTGCCTCGCTGCCCACCGGCCCTGCAGAACCCACTCCGCACCACC
ACCTGTGTCGGCCAGTCTGTGCACAGCCTTGGTCTCGGCCTTGGGCAGGAGCCTCAGAGGGTCTGGTCCC
CAACAACAGCTCTCCCTGCAGAGGGCCCTGCAGCTGCCCCAAAGAACAGACACCAGGACTCCGAGGGGAT
ACCCTATCTGGAGGGCCTGGCCCGTAGCAGCTGCACTGACGACAACGACAACAAGGACGAAGACGAGGAC
CCTAACTCCAACACCAGCTCCAGCCAAGACAGCAATACCCCTCATGATACCAGCAATTCCTCTTCTGTGG
ATTGGGACACTACTGAGAGACCAGGGGTGGTCCCCAGCAGGAACAGACTCACAGAGATGATCCCAAGGAG
GCCTCAGGAGGGACTGAGAGCTGACAGTGCTCGAAAGGCCACCAGGTCCCCAGCCCGAGGAGACACAGCA
GGCCAGAGGAAGGAGAATTCTGGCAGTGGTGGACAGAGCGCTGGCCAGCACTGGGCAAAGCTGCGATCAG
AAAGCGGCTACTTCTCTCTGGAGCGACAGCGCTCAGGGCAAACCCAGGCTTCCTCCGGGACACCACCGAG
CGGACCTCGGGGCACCACCCAGGCTTCTTCTGCCCAAAGGGATGTTTTCCAGGCTGCTCCTGCACAAGAA
GCTCCCCAAACCTCCTCTCTGCCCCGAAACACCCAAAGGGACACACAGCGGAGCACCCCTAGAACCTCCT
CTCCTTCCAGAGTATCCCAGCGGGACACTCCCAGAGTCATGTCCACCCAGCGGAAGAATACTCCTCTTTC
CTCTCCCCTCAGAGCCACTCCAGAGACCCTAAAGATCTCTGCACCAGAAGATGGCACCCATGTTACACCA
TCTCCATGTGTCCAAGACTCCTCTCTCAACAGAACCAGCCAGCGGGACAGCTCTAGAACTCCCTGTATCC
AGTGGGACAATCCCAGGGCCTCCTCTCCCAACAGAACTACTCAGCGGGACAACCCTAGGACTCCCTGTAC
CCAGAGGGACAATCCCAGGGCCTCCTCTCCCAACAGAACTACTCAGCGGGACAACCCTAGGACTCCCTGT
ACCCAGAGGGACAATCCCAGGGCCTCCTCTCCCAACAGAACTACTCAGAGGGACAACCCCAGGACTCCCT
GTGCCCAGAGGGACAATCCCAGGGCTGCTTCTCCCAACAGAAGTACTCAGCGGGACAGCCCCAGGACTCC
CTGTGCCCAACGGGACAATCCCAGGGCCTCCTCTCCCAACAGAACTGCCCAGCGAGACAACCCCAGGACT
CCCTGTGCCCAGCGGGACAACCCCAGGACCTCCTGCACATCACAGAATACCCCCAGGACCCCTTCTACCC
AAGCAGATAAGACTACAGCTTCCTGCAGCAAATGGGAGCATCTGCGAAGCGCCTGCACCCAGCGAGACAA
CCCCAGGACCTTCTCTCAAGGCTGCACCCAAAAGGACAATCCAGGACCACCCTCGCCCCGCCGTGCCACT
CAGGGGAGTAATTCCAGGAACCCTTCCCCCCACCGTACCAACAAAGATATCCCTTGGGCTTCCTTTCCCC
TTCGGCCAACACAGAGTGACAGTCCCCGAACCTCATCTCCATCGCGCACCAAACAAAACCAGGTGCCTTG
GGCATCCATTTCTCTCCGGCCAACCCAAGGGGACAAGCCTCAGACCTCAGCTCCTACCAGGCTAGCTCAC
AATGACCCTCCCCAGCAGTATTCGCCATCCCTGGCCACCACCTCCTCCTCCTCTCATAACCCTGGCCATT
CCAGTGCCTCTAGGACTTCATCGCCTCTTCACGCAGCACCTCGAGGGGCTCCCCAGACCTCTTTGGAGTC
CTCTCAGCCACCCTGCACTGTGTGCATCGGGCACCGGGACGCACCTCGCGCCTCTTCCCCACCTCGCTAT
TTTCAGTACGACCCTTTCCCCTTCTTCCCAGATCCCCGCTCGTCTGAGAGTGAATCGCCCCACCACGAAC
CCCCCTACATGCCGCCTGCAGTGTGTATTGGGCACCGTGATGCCCCCCGGGCCACTTCGCCACCTCGTCA
CACCCAGTTCGATCCCTTCCCCTTCCTCCCAGACACATCAGATGCTGATAATGAGTCCCCGCAGCACGAC
CCCCCTCAGTTTCCCCCACCAGTGTGCATCGGGTACCGCGACGCTCCGCGGGCCTCTTCCCCACCACGCC
AGTTCCCAGAGCCCTCCTTCTTCCAAGATCTCCCCAGGGCCAGCACAGAGAGCCTTGTCCCTTCCACAGA
CTCTATGCATGAGCCGCCCCACATTCCCACTCCTGTATGTATCGGACACAGAGACGCTCCCTCCTTCTCC
TCCCCGCCACGCCAGGCCCCCGAGCCTTCCCTCTTCTTCCAGGATCCTCCTGGGACCAGTATGGAGAGTC
TTGCTCCTTCCATTGACTCTCTGCATGGCTGCCCACTGCTGCCCCCCCAAGTTTGCATCGGCCATCGGGA
TGCACCCAGAGCCTCCTCTCCTCCCCGCCACCCACCTAGTGACATAGGTCTCCTGGCACCCTCACCTCCA
CCAGGTAGCTCGGGCTCCCGGGGCTCAGCACCCCCAGGGGAGACCAGACACAACTTGGAGAGGGAGGAGT
ACACCATGCTGGCTGACCTGCCCCCACCCAGGAGGCTGGCTCAGAGGGGGCCAGAGCCCCAGGCACAGGG
CAGCAACGAGGGCCGTACCCGCAGCCCTGGCCGAGCAGAGGTGGAGCGCCTCTTCGGGCAAGAGCGCAGG
TGA

Translation (980 aa):
MSMEQDTRALLPTQGTAWATASAPVARLQGPQGDSHQACSQEPHSPSSAEAPYCDLPRCPPALQNPLRTT
TCVGQSVHSLGLGLGQEPQRVWSPTTALPAEGPAAAPKNRHQDSEGIPYLEGLARSSCTDDNDNKDEDED
PNSNTSSSQDSNTPHDTSNSSSVDWDTTERPGVVPSRNRLTEMIPRRPQEGLRADSARKATRSPARGDTA
GQRKENSGSGGQSAGQHWAKLRSESGYFSLERQRSGQTQASSGTPPSGPRGTTQASSAQRDVFQAAPAQE
APQTSSLPRNTQRDTQRSTPRTSSPSRVSQRDTPRVMSTQRKNTPLSSPLRATPETLKISAPEDGTHVTP
SPCVQDSSLNRTSQRDSSRTPCIQWDNPRASSPNRTTQRDNPRTPCTQRDNPRASSPNRTTQRDNPRTPC
TQRDNPRASSPNRTTQRDNPRTPCAQRDNPRAASPNRSTQRDSPRTPCAQRDNPRASSPNRTAQRDNPRT
PCAQRDNPRTSCTSQNTPRTPSTQADKTTASCSKWEHLRSACTQRDNPRTFSQGCTQKDNPGPPSPRRAT
QGSNSRNPSPHRTNKDIPWASFPLRPTQSDSPRTSSPSRTKQNQVPWASISLRPTQGDKPQTSAPTRLAH
NDPPQQYSPSLATTSSSSHNPGHSSASRTSSPLHAAPRGAPQTSLESSQPPCTVCIGHRDAPRASSPPRY
FQYDPFPFFPDPRSSESESPHHEPPYMPPAVCIGHRDAPRATSPPRHTQFDPFPFLPDTSDADNESPQHD
PPQFPPPVCIGYRDAPRASSPPRQFPEPSFFQDLPRASTESLVPSTDSMHEPPHIPTPVCIGHRDAPSFS
SPPRQAPEPSLFFQDPPGTSMESLAPSIDSLHGCPLLPPQVCIGHRDAPRASSPPRHPPSDIGLLAPSPP
PGSSGSRGSAPPGETRHNLEREEYTMLADLPPPRRLAQRGPEPQAQGSNEGRTRSPGRAEVERLFGQERR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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