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Report for CCDS38408.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38408.1 Public Mus musculus 3 Skil 23 108 98 CCDS HistoryNCBI Gene:20482Re-query CCDS DB by CCDS ID:38408.1Re-query CCDS DB by GeneID:20482See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38408.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029194.11 ENSMUSP00000029194.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029194.11Link to Ensembl Protein Viewer:ENSMUSP00000029194.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029194Re-query CCDS DB by Protein ID:ENSMUSP00000029194
Original member Current member EBI ENSMUST00000118204.1 ENSMUSP00000112413.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118204.1Link to Ensembl Protein Viewer:ENSMUSP00000112413.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118204Re-query CCDS DB by Protein ID:ENSMUSP00000112413
Original member NCBI NM_011386.3 NP_035516.2 Updated not alive Link to Nucleotide Sequence:NM_011386.3Link to Protein Sequence:NP_035516.2Re-query CCDS DB by Nucleotide ID:NM_011386Re-query CCDS DB by Protein ID:NP_035516
Current member NCBI NM_011386.4 NP_035516.2 Accepted alive Link to Nucleotide Sequence:NM_011386.4Link to Protein Sequence:NP_035516.2Re-query CCDS DB by Nucleotide ID:NM_011386Re-query CCDS DB by Protein ID:NP_035516Link to BLAST:NP_035516.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035516.2 675 Q60665-1 675 100% 0 0

Chromosomal Locations for CCDS 38408.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 31097331 31098419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31111625 31111722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31113408 31113640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31116816 31117039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31117373 31117597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31118455 31118613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGAAAACCTCCAGTCTAAGTTCTCCTTAGTTCAGGGTTCAAATAAAAAGCTGAACGGCATGGAGGATG
ATGGCAGTCCTCCTGTGAAAAAAATGATGACCGACATTCATGCCAATGGGAAAACCCTGACCAAGGTGAA
GAAGGAGCACTTAGATGACTATGGAGATGCATCCGTGGAGCCGGATGGCGAGCACGCCAAGCGAAACCGT
GTTTCTCTACCTGAAACTTTAAATTTAAACCCCAGTCTGAAACACACGCTGGCACAATTCCACTTAAGCA
GTCAGAGCTCTTTGGGTGGACCAGCAGCATTTTCTGCTCGATATTCCCAGGAGAGCATGTCACCGACTGT
ATTCCTGCCTCTTCCCTCTCCTCAGGTTCTTCCCGGCCCTCTTCTCATTCCTTCTGATAGCTCCACAGAG
CTCACTCAGACTCTTTTGGAAGGGGAGTCTATTTCTTGTTTTCAAGTTGGAGGAGAAAAGAGACTCTGTT
TGCCCCAAGTCTTAAACTCTGTCCTCCGAGAATTTTCACTCCAGCAGATAAACACAGTATGTGATGAGCT
GTACATCTATTGTTCAAGGTGTACTTCAGACCAGCTTCATATCTTAAAGGTCTTAGGGATACTCCCATTT
AATGCTCCATCCTGTGGGCTGATCACGTTGACCGATGCACAAAGACTCTGTAATGCTTTACTGCGGCCAC
GAACTTTTCCTCAAAATGGTAGCATACTTCCTGCTAAAAGCTCTCTGGCCCAGTTGAAGGAAACTGGCAG
TGCCTTTGAAGTGGAACATGAATGCTTGGGCAAATGTCAGGGTCTCTTTGCGCCTCAGTTTTATGTTCAG
CCCGACGCTCCCTGTATCCAGTGCCTGGAGTGCTGTGGAATGTTTGCTCCCCAGACGTTCGTCATGCATT
CGCACAGATCCCCTGACAAGAGAACTTGCCATTGGGGCTTTGAGTCAGCCAAGTGGCACTGTTACCTTCA
TGTGAACCAAAAATACCTAGGGACACCCGAAGAAAAGAAACTGAAGATAATTTTAGAAGAAATGAAGGAG
AAGTTTAGCATGAGAAATGGAAAGAGAATCCAATCAAAGACAGATACACCATCGGGAATGGAATTGCCAT
CATGGTATCCTGTTATAAAACAGGAAGGTGACCATGTTCCCCAGACACATTCATTTTTACACCCCAGCTA
CTACCTGTACATGTGTGACAAAGTGGTTGCACCGAATGTGTCGCTCACATCTGCTGCGTCCCAGTCTAAA
GAGGCCACCAAGGCAGAGACAAGTAAGTCCACCTCCAAACAGTCAGAAAAGCCTCATGAGAGTAGTCAGC
ATCAAAAAACAGTGTCTTACCCAGACGTCTCACTTGAGGAGCAGGAGAAAATGGATTTAAAAACCAGTAG
AGAATTATACAGTTGTTTAGATTCATCAATCTCAAATAATTCTACAAGTAGAAAGAAATCTGAGTCTGCT
GTGTGCAGCTTAGTGAGAGGCACAAGCAAGCGTGATTCAGAAGATTCCTCTCCACTTCTGGTCAGAGATG
GTGAAGACGACAAGGGGAAGATCATGGAAGACGTGATGAGAACCTATGTAAGACAGCAGGAGAAGCTGAA
CTCCATTCTGCAGAGGAAGCAGCAGCTGCAGATGGAGGTGGAGATGCTGAGCAGTTCAAAGGCGATGAAG
GAGCTCACTGAAGAGCAGCAGAATCTACAGAAAGAGCTTGAGTCGTTACAGAGTGAGCATGCTCAGAGGA
TGGAGGAATTCTATATTGAACAGAGAGACTTAGAGAAAAAGCTGGAGCAGGTGATGCAGCAGAAATGCAC
CTGTGACTCAACCTTGGAGAAGGACAGGGAGGCCGAGTATGCGGCTCAGCTGGCAGAACTGAGGCAAAGA
CTAGACCATGCTGAGGCCGACAGGCAGGAACTCCAAGATGAACTCAGACAGGAGCGGGAGGCGAGACAGA
AGCTGGAGATGATGATAAAGGAGCTGAAGCTGCAGATTGGCAAGTCGTCCAAGCCCTCCAAGGACTAA

Translation (675 aa):
MENLQSKFSLVQGSNKKLNGMEDDGSPPVKKMMTDIHANGKTLTKVKKEHLDDYGDASVEPDGEHAKRNR
VSLPETLNLNPSLKHTLAQFHLSSQSSLGGPAAFSARYSQESMSPTVFLPLPSPQVLPGPLLIPSDSSTE
LTQTLLEGESISCFQVGGEKRLCLPQVLNSVLREFSLQQINTVCDELYIYCSRCTSDQLHILKVLGILPF
NAPSCGLITLTDAQRLCNALLRPRTFPQNGSILPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQ
PDAPCIQCLECCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKE
KFSMRNGKRIQSKTDTPSGMELPSWYPVIKQEGDHVPQTHSFLHPSYYLYMCDKVVAPNVSLTSAASQSK
EATKAETSKSTSKQSEKPHESSQHQKTVSYPDVSLEEQEKMDLKTSRELYSCLDSSISNNSTSRKKSESA
VCSLVRGTSKRDSEDSSPLLVRDGEDDKGKIMEDVMRTYVRQQEKLNSILQRKQQLQMEVEMLSSSKAMK
ELTEEQQNLQKELESLQSEHAQRMEEFYIEQRDLEKKLEQVMQQKCTCDSTLEKDREAEYAAQLAELRQR
LDHAEADRQELQDELRQEREARQKLEMMIKELKLQIGKSSKPSKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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