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Report for CCDS10461.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10461.1 Public Homo sapiens 16 TRAF7 24 110 108 CCDS HistoryNCBI Gene:84231Re-query CCDS DB by CCDS ID:10461.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10461.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000326181.11 ENSP00000318944.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000326181.11Link to Ensembl Protein Viewer:ENSP00000318944.6Re-query CCDS DB by Nucleotide ID:ENST00000326181Re-query CCDS DB by Protein ID:ENSP00000318944
Original member Current member EBI ENST00000704452.1 ENSP00000515903.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704452.1Link to Ensembl Protein Viewer:ENSP00000515903.1Re-query CCDS DB by Nucleotide ID:ENST00000704452Re-query CCDS DB by Protein ID:ENSP00000515903
Original member Current member NCBI NM_032271.3 NP_115647.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032271.3Link to Protein Sequence:NP_115647.2Re-query CCDS DB by Nucleotide ID:NM_032271Re-query CCDS DB by Protein ID:NP_115647Link to BLAST:NP_115647.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115647.2 670 Q6Q0C0-1 670 100% 0 0

Chromosomal Locations for CCDS 10461.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2163921 2164001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2165879 2165936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2168077 2168168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2170614 2170730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2171264 2171356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2171572 2171605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2172191 2172374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2172465 2172599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2173182 2173399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2173481 2173554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2173788 2173836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2173921 2174048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2174251 2174333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2175111 2175150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2175301 2175417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2175500 2175622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2175834 2175953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2176049 2176180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2176265 2176384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2176560 2176574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGAGCTCAGGCAAGAGTGCCCGCTACAACCGCTTCTCCGGGGGGCCCAGCAATCTTCCCACCCCAGACG
TCACCACAGGGACCAGAATGGAAACGACCTTCGGACCCGCCTTTTCAGCCGTCACCACCATCACAAAAGC
TGACGGGACCAGCACCTACAAGCAGCACTGCAGGACACCCTCCTCCTCCAGCACCCTTGCCTACTCCCCG
CGGGACGAGGAGGACAGCATGCCCCCCATCAGCACTCCCCGCCGCTCCGACTCCGCCATCTCTGTCCGCT
CCCTGCACTCAGAGTCCAGCATGTCTCTGCGCTCCACATTCTCACTGCCCGAGGAGGAGGAGGAGCCGGA
GCCACTGGTGTTTGCGGAGCAGCCCTCGGTGAAGCTGTGCTGTCAGCTCTGCTGCAGCGTCTTCAAAGAC
CCCGTGATCACCACGTGTGGGCACACGTTCTGTAGGAGATGCGCCTTGAAGTCAGAGAAGTGTCCCGTGG
ACAACGTCAAACTGACCGTGGTGGTGAACAACATCGCGGTGGCCGAGCAGATCGGGGAGCTCTTCATCCA
CTGCCGGCACGGCTGCCGGGTAGCGGGCAGCGGGAAGCCCCCCATCTTTGAGGTGGACCCCCGAGGGTGC
CCCTTCACCATCAAGCTCAGCGCCCGGAAGGACCACGAGGGCAGCTGTGACTACAGGCCTGTGCGGTGTC
CCAACAACCCCAGCTGCCCCCCGCTGCTCAGGATGAACCTGGAGGCCCACCTCAAGGAGTGCGAGCACAT
CAAATGCCCCCACTCCAAGTACGGGTGCACGTTCATCGGGAACCAGGACACTTACGAGACCCACCTGGAG
ACTTGCCGCTTCGAGGGCCTGAAGGAGTTTCTGCAGCAGACGGATGACCGCTTCCACGAGATGCACGTGG
CTCTGGCCCAGAAGGACCAGGAGATCGCCTTCCTGCGCTCCATGCTGGGAAAGCTCTCGGAGAAGATCGA
CCAGCTAGAGAAGAGCCTGGAGCTCAAGTTTGACGTCCTGGACGAAAACCAGAGCAAGCTCAGCGAGGAC
CTCATGGAGTTCCGGCGGGACGCATCCATGTTAAATGACGAGCTGTCCCACATCAACGCGCGGCTGAACA
TGGGCATCCTAGGCTCCTACGACCCTCAGCAGATCTTCAAGTGCAAAGGGACCTTTGTGGGCCACCAGGG
CCCTGTGTGGTGTCTCTGCGTCTACTCCATGGGTGACCTGCTCTTCAGTGGCTCCTCTGACAAGACCATC
AAGGTGTGGGACACATGTACCACCTACAAGTGTCAGAAGACACTGGAGGGCCATGATGGCATCGTGCTGG
CTCTCTGCATCCAGGGGTGCAAACTCTACAGCGGCTCTGCAGACTGCACCATCATTGTGTGGGACATCCA
GAACCTGCAGAAGGTGAACACCATCCGGGCCCATGACAACCCGGTGTGCACGCTGGTCTCCTCACACAAC
GTGCTCTTCAGCGGCTCCCTGAAGGCCATCAAGGTCTGGGACATCGTGGGCACTGAGCTGAAGTTGAAGA
AGGAGCTCACAGGCCTCAACCACTGGGTGCGGGCCCTGGTGGCTGCCCAGAGCTACCTGTACAGCGGCTC
CTACCAGACAATCAAGATCTGGGACATCCGAACCCTTGACTGCATCCACGTCCTGCAGACGTCTGGTGGC
AGCGTCTACTCCATTGCTGTGACAAATCACCACATTGTCTGTGGCACCTACGAGAACCTCATCCACGTGT
GGGACATTGAGTCCAAGGAGCAGGTGCGGACCCTCACGGGCCACGTGGGCACCGTGTATGCCCTGGCGGT
CATCTCGACGCCAGACCAGACCAAAGTCTTCAGTGCATCCTACGACCGGTCCCTCAGGGTCTGGAGTATG
GACAACATGATCTGCACGCAGACCCTGCTGCGTCACCAGGGCAGTGTCACCGCGCTGGCTGTGTCCCGGG
GCCGACTCTTCTCAGGGGCTGTGGATAGCACTGTGAAGGTTTGGACTTGCTAA

Translation (670 aa):
MSSGKSARYNRFSGGPSNLPTPDVTTGTRMETTFGPAFSAVTTITKADGTSTYKQHCRTPSSSSTLAYSP
RDEEDSMPPISTPRRSDSAISVRSLHSESSMSLRSTFSLPEEEEEPEPLVFAEQPSVKLCCQLCCSVFKD
PVITTCGHTFCRRCALKSEKCPVDNVKLTVVVNNIAVAEQIGELFIHCRHGCRVAGSGKPPIFEVDPRGC
PFTIKLSARKDHEGSCDYRPVRCPNNPSCPPLLRMNLEAHLKECEHIKCPHSKYGCTFIGNQDTYETHLE
TCRFEGLKEFLQQTDDRFHEMHVALAQKDQEIAFLRSMLGKLSEKIDQLEKSLELKFDVLDENQSKLSED
LMEFRRDASMLNDELSHINARLNMGILGSYDPQQIFKCKGTFVGHQGPVWCLCVYSMGDLLFSGSSDKTI
KVWDTCTTYKCQKTLEGHDGIVLALCIQGCKLYSGSADCTIIVWDIQNLQKVNTIRAHDNPVCTLVSSHN
VLFSGSLKAIKVWDIVGTELKLKKELTGLNHWVRALVAAQSYLYSGSYQTIKIWDIRTLDCIHVLQTSGG
SVYSIAVTNHHIVCGTYENLIHVWDIESKEQVRTLTGHVGTVYALAVISTPDQTKVFSASYDRSLRVWSM
DNMICTQTLLRHQGSVTALAVSRGRLFSGAVDSTVKVWTC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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