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Report for CCDS28293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28293.1 Public Mus musculus 16 Bach1 23 108 98 CCDS HistoryNCBI Gene:12013Re-query CCDS DB by CCDS ID:28293.1Re-query CCDS DB by GeneID:12013See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28293.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026703.5 ENSMUSP00000026703.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026703.5Link to Ensembl Protein Viewer:ENSMUSP00000026703.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026703Re-query CCDS DB by Protein ID:ENSMUSP00000026703
Original member Current member NCBI NM_007520.2 NP_031546.1 Accepted alive Link to Nucleotide Sequence:NM_007520.2Link to Protein Sequence:NP_031546.1Re-query CCDS DB by Nucleotide ID:NM_007520Re-query CCDS DB by Protein ID:NP_031546Link to BLAST:NP_031546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031546.1 739 P97302 739 100% 0 0

Chromosomal Locations for CCDS 28293.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 87715391 87715624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87718807 87720150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87722402 87722608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 87729437 87729871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGTCTGTGAGTGAGAGTGCGGTATTTGCCTACGAGTCCTCTGTGCATAGCACCAACGTCTTGCTCAGCC
TCAATGACCAGCGGAAGAAGGATGTCCTGTGTGATGTGACTGTCCTGGTGGAGGGCCAGCGGTTCCGAGC
CCACCGCTCGGTGCTGGCTGCGTGCAGCAGCTACTTCCACTCGAGAATCGTAGGCCAGACTGACGCAGAG
CTCACCGTCACACTGCCTGAAGAGGTAACGGTTAAAGGATTTGAACCTTTAATTCAGTTTGCCTACACTG
CCAAACTCATTTTAAGTAAAGACAATGTTGACGAAGTGTGCAGGTGTGTGGAGTTTCTAAGCGTACACAA
TATCGAGGAATCCTGCTTCCAGTTTCTCAAGTTTAAGTTTTTGGACTCCACTTCAGAGCAGCAGGAATGC
GCAAGAAAAAAATGCTTCTCCTCACACTGTCAGAAAGCAGATTTTAAATTTTCATTTTCAGAACAGAAAG
ATCTCGAAATCGATGAAGCAGATGAATTCTTGGAAAAGAAACGTGTTCAGACGCCTCAGTGTGACTCCCG
CAGGTGTCAGGGCAGTGTAAAAGCATCCCCCCCTCTCCAGGACAGTGTCAGTCAGGCGTGCCAGTCCCTG
TGCACGGACAAGGATGGAGCCCTGGCATTGCCATCTCTATGCCCCAAATACAGAAAGTTCCAGAAAGCGT
TTGGAACTGACAAGATCCGAACTCTAGAATCCGGTGTCAGAGATGTCCACACTGCCTCTGTCCAGCCAAA
TGAGACCTCTGAACTTGAGTGTTTTGGGGGAGCGCAGGGCTGTGCAGATTTACACGTGATTTTAAAATGT
GAAGGAATGAAGGCAGCCATGGAGAGTGAAGACACAGAGGGCCAGGATCCCTCCCCTCAGTGCCCTGCAG
AGCAGCCCCAAGGGACACCCTTGCCTCAGGATTCTGCAGGACCTCACGGGCTCTACTCCTTGTCAGCCTT
ACACACATATGAGCAGTCAGGTGACGTGGCCTTTGCTGGGGTGCAGAGTAAAACCGTGAAGACAGAAAAG
CCTCTGTCGAGGCCAGATGCCCAGGACGAGAAGCCATCGGAAAATCAGGATTTATATCTGAAGTCTAGCA
TGGGCCCTAAAGAAGACAGCAGCAGCCTTGCATCTGAGGATCGGAGTAGTGTGGAGCGAGAGGTGGCAGA
GCACCTGGCCAAAGGCTTCTGGAGTGACATTTGCAGCACGGACTCGCCTTGCCAAATGCAGTTGTCGCCC
ACTGTGGCCAAAGACGGCCCAGAACAGGGCTACTCGCAAAGGCGATCTGAGTGTCCCTGGTTGGGTATCA
GGATCAGTGAGAGCCCCGAGCCAGGCCAGCGGACTTTCACAACTCTCAGTTCCGTCAACTGCCCTTTTAT
CAGTACTCTGAGTTCCGAAGGCTGCTCAAGCAACTTGGAAATTGGAAACTACGATTATGTCTCGGAGCCT
CAGCAGGAGCCTTGCCCGTATGCTTGTGTGATTAGCCTGGGAGATGACTCTGAGACGGACACGGAAGGTG
ACAGCGAGTCCTGTTCTGCCAGGGAGCAGGACTGTGAGGTGAAGCTGCCATTCAATGCCCAACGGATAAT
TTCGCTCTCACGAAATGATTTCCAATCCTTGTTGAAAATGCACAAACTGACCCCAGAGCAGCTCGACTGT
ATCCATGACATCCGCAGAAGGAGTAAGAACAGAATCGCCGCGCAACGCTGTCGCAAGAGGAAACTTGACT
GTATCCAGAACCTTGAGTCGGAAATCGAGAAGCTGCAAAGTGAAAAGGAGAGCTTGCTGAAGGAGCGAGA
CCACATTCTGTCAACGCTGGGGGAGACAAAGCAGAACCTGACCGGACTTTGTCAGCAGGTGTGCAAGGAA
GCCGCCCTGAGCCCCGAGCAGATCCAGATCCTTGCCAAGTACTCGGCCTCCGACTGCCCGCTTTCCTTTT
TAATTTCTGAGAAAGGAAAAAGTACTCCCGACGGCGAGCTTGCTTTTACATCGGTTTTCAGTGTGTCTGA
CGTGCCTCCAACTGCACCACCTCCCTGTGGGCGAGGGAGCAGCGCGGCCAGCCAGGAGCTGGTGCAGGAG
TCCCCGCCAACCACCGCAGCTGCCCCAGAGCAGGCCACGCTGTTGGAACCCTGTCGGCAGAGTGCTGGGA
TCTCAGACTTCTGTCAGCAGATGTCTGACAAGTGCACTACTGACGAGTAA

Translation (739 aa):
MSVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAE
LTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDSTSEQQEC
ARKKCFSSHCQKADFKFSFSEQKDLEIDEADEFLEKKRVQTPQCDSRRCQGSVKASPPLQDSVSQACQSL
CTDKDGALALPSLCPKYRKFQKAFGTDKIRTLESGVRDVHTASVQPNETSELECFGGAQGCADLHVILKC
EGMKAAMESEDTEGQDPSPQCPAEQPQGTPLPQDSAGPHGLYSLSALHTYEQSGDVAFAGVQSKTVKTEK
PLSRPDAQDEKPSENQDLYLKSSMGPKEDSSSLASEDRSSVEREVAEHLAKGFWSDICSTDSPCQMQLSP
TVAKDGPEQGYSQRRSECPWLGIRISESPEPGQRTFTTLSSVNCPFISTLSSEGCSSNLEIGNYDYVSEP
QQEPCPYACVISLGDDSETDTEGDSESCSAREQDCEVKLPFNAQRIISLSRNDFQSLLKMHKLTPEQLDC
IHDIRRRSKNRIAAQRCRKRKLDCIQNLESEIEKLQSEKESLLKERDHILSTLGETKQNLTGLCQQVCKE
AALSPEQIQILAKYSASDCPLSFLISEKGKSTPDGELAFTSVFSVSDVPPTAPPPCGRGSSAASQELVQE
SPPTTAAAPEQATLLEPCRQSAGISDFCQQMSDKCTTDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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