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Report for CCDS30158.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30158.1 Public Mus musculus X F9 23 108 98 CCDS HistoryNCBI Gene:14071Re-query CCDS DB by CCDS ID:30158.1Re-query CCDS DB by GeneID:14071See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30158.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033477.4 ENSMUSP00000033477.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033477.4Link to Ensembl Protein Viewer:ENSMUSP00000033477.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000033477Re-query CCDS DB by Protein ID:ENSMUSP00000033477
Original member Current member NCBI NM_007979.2 NP_032005.1 Accepted alive Link to Nucleotide Sequence:NM_007979.2Link to Protein Sequence:NP_032005.1Re-query CCDS DB by Nucleotide ID:NM_007979Re-query CCDS DB by Protein ID:NP_032005Link to BLAST:NP_032005.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032005.1 471 P16294 471 100% 0 0

Chromosomal Locations for CCDS 30158.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 59999464 59999551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60003837 60004000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60004408 60004432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60010001 60010114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60016162 60016290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60018938 60019170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60028435 60028549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 60028894 60029441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1416 nt):
ATGAAGCACCTGAACACCGTCATGGCAGAATCCCCGGCTCTCATCACCATCTTCCTTTTAGGATATCTAC
TCAGTACCGAATGTGCAGTTTTCCTTGATCGTGAAAATGCCACCAAAATTCTTACCCGTCCAAAGAGATA
TAATTCAGGAAAACTAGAAGAGTTTGTTCGAGGAAACCTTGAAAGAGAGTGTATAGAAGAAAGATGTAGT
TTTGAAGAAGCACGAGAAGTTTTTGAAAACACTGAAAAAACTACTGAATTTTGGAAGCAGTATGTTGATG
GAGATCAGTGTGAATCAAATCCTTGTTTAAATGGTGGAATATGCAAGGATGATATTAGTTCCTATGAATG
CTGGTGCCAAGTTGGATTTGAAGGAAGGAACTGTGAATTAGATGCAACGTGTAACATTAAAAATGGCAGG
TGCAAGCAGTTTTGTAAAAACAGTCCTGATAACAAGGTAATTTGTTCCTGCACTGAGGGATACCAACTTG
CAGAAGACCAGAAGTCCTGTGAACCAACAGTTCCATTTCCATGTGGGAGAGCTTCTATTTCATACAGTTC
TAAAAAGATCACGAGAGCTGAGACTGTTTTCTCTAATATGGACTATGAAAATTCTACTGAAGCTGTATTC
ATTCAAGATGACATCACTGATGGTGCCATTCTTAATAACGTCACTGAAAGTAGTGAATCACTTAATGACT
TCACTCGAGTTGTTGGTGGAGAAAACGCAAAACCGGGTCAAATCCCTTGGCAGGTCATTTTAAATGGTGA
AATTGAGGCATTCTGTGGAGGTGCCATCATTAATGAAAAATGGATTGTAACTGCTGCCCACTGTCTTAAA
CCTGGTGATAAAATTGAGGTTGTTGCTGGTGAATATAACATTGATAAGAAGGAAGACACAGAACAAAGGA
GAAATGTGATTCGAACTATCCCTCATCACCAGTACAATGCAACTATTAATAAGTATAGTCATGACATTGC
CTTGCTGGAACTGGATAAACCTTTAATACTAAACAGCTATGTAACACCTATCTGTGTTGCCAATAGGGAA
TATACAAATATCTTCCTCAAGTTTGGTTCTGGCTATGTCAGTGGCTGGGGAAAAGTCTTCAACAAAGGGA
GACAGGCTTCCATTCTTCAGTACCTTAGAGTTCCACTGGTGGATAGAGCCACATGCCTTAGGTCCACAAC
ATTCACTATCTATAACAACATGTTCTGTGCAGGCTACCGTGAAGGAGGCAAAGATTCGTGTGAAGGAGAT
AGTGGGGGACCCCATGTTACTGAAGTAGAAGGGACAAGTTTCTTAACTGGCATTATTAGCTGGGGTGAAG
AATGTGCAATGAAAGGCAAATATGGAATATATACTAAGGTTTCCCGGTACGTCAACTGGATTAAGGAAAA
AACAAAGCTAACTTAA

Translation (471 aa):
MKHLNTVMAESPALITIFLLGYLLSTECAVFLDRENATKILTRPKRYNSGKLEEFVRGNLERECIEERCS
FEEAREVFENTEKTTEFWKQYVDGDQCESNPCLNGGICKDDISSYECWCQVGFEGRNCELDATCNIKNGR
CKQFCKNSPDNKVICSCTEGYQLAEDQKSCEPTVPFPCGRASISYSSKKITRAETVFSNMDYENSTEAVF
IQDDITDGAILNNVTESSESLNDFTRVVGGENAKPGQIPWQVILNGEIEAFCGGAIINEKWIVTAAHCLK
PGDKIEVVAGEYNIDKKEDTEQRRNVIRTIPHHQYNATINKYSHDIALLELDKPLILNSYVTPICVANRE
YTNIFLKFGSGYVSGWGKVFNKGRQASILQYLRVPLVDRATCLRSTTFTIYNNMFCAGYREGGKDSCEGD
SGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKLT


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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